UFO02110.5prime Sequence
1116 bp (1019 high quality bases) assembled on 2008-12-21
> UFO02110.5prime
CAGTCGACATGTCGTCCGAGGAGCTGGCGCCAATTAACGAGCAGGACTTC
AAGGATCTCAAGGAGCGCATGAAATTGATTGTGGAGGCGGATCCAAAGCA
GTATCACAATGACTTTTCGCTGCGTCGCTATCTGCGCGCCTTCAAGACCA
CAGATGACGCATTTCAGGCCATTCTAAAGACCAACAAGTGGCGTGAGACA
TACGGCGTGGACAAGCTGTCCGAGATGGACCGCAGCCAGCTGGACAAGAA
GGCGCGCCTGCTGCGCCACCGCGACTGCATCGGCCGTCCGGTGATCTACA
TTCCGGCCAAAAATCACAGCTCGGAGCGGGACATCGACGAGCTGACGCGC
TTCATCGTCTACAATTTGGAGGAGGCGTGCAAGAAGTGCTTCGAGGAGGT
CACCGACCGCCTGTGCATTGTCTTCGATCTGGCCGAGTTCAGCACCAGCT
GCATGGACTATCAGCTAGTGCAGAATCTCATCTGGCTGCTGGGCAAGCAC
TTTCCGGAGCGCCTGGGCGTCTGTCTGATCATCAACTCGCCCGGTCTGTT
CTCCACCATTTGGCCGGCCATACGTGTACTGTTGGACGACAATACGGCCA
AGAAGGTGAAGTTTGTGGCGGACGAGGCGGAGCTGTGCCAGTACCTCATC
CCCGACATCCTGCCAACGGACATGGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGAATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAGGCATTCTGCGACATGTAGCCATCACAAACGGCATGATGACTGAAT
CGCCAGCGCATCAGCACCTGTCGCTGCGTTTAATATTTGCCATGGTGAAA
CGGGGGCGAGAAGTGTCCTATTGGCCAGGTTATCAACTGGTAAACTCACC
AGGAATGCTGAACCAA
UFO02110.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32485-RA | 1136 | CG32485-RA | 217..882 | 9..674 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3051002..3051511 | 165..674 | 2550 | 100 | Plus |
| 3L | 28110227 | 3L | 3050539..3050698 | 9..168 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:35:42 has no hits.
UFO02110.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:15 Download gff for
UFO02110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32485-RA | 211..884 | 9..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:59 Download gff for
UFO02110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32485-RA | 217..890 | 9..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:16 Download gff for
UFO02110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32485-RA | 217..890 | 9..682 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:16 Download gff for
UFO02110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3050539..3050697 | 9..167 | 100 | -> | Plus |
| 3L | 3051005..3051519 | 168..682 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:59 Download gff for
UFO02110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3050539..3050697 | 9..167 | 100 | -> | Plus |
| arm_3L | 3051005..3051519 | 168..682 | 99 | == | Plus |
