UFO02112.5prime Sequence
1090 bp (1010 high quality bases) assembled on 2008-12-21
> UFO02112.5prime
CAGTCGACATGTTCCCCAAAAGTCACATCGTTTTGGCCAGCTCTTTGCTG
TTGTTAATCGCCCTGCCAGTAATTCGCGCCGATCTCATGTGCTATGTGTG
CGATAATTGTGCCCAGCTACCGAAGGATGCACCCCTGCTGGCGTGCAATG
AGGATTTCTTTAATCCCGGCGGCAGCACAGAAGCCTCCACGGTGACCACC
ACCGAAGCGAGCACCACTACGACGCAGGAGACTACAACAACACCGGAAAC
AACCACTTTGATTGTGACAAGTGTCCAAACGGATTCACCCACAACGGAGT
CCACGACGACGACAGTGGAAACCACCACCAGCGATCCGACCACCGAGAGC
ACCCAGAGCACTGAAAGCACCGAGGCTCCGATACCCACGCCGGGAACCGC
CGGACCCGTCGAAACGACCACCGGAGTGCCCACGCCACCCGCTGAGGATC
TGTCCGCCATGTCGGTGGCCTTGAACACCACCCGTTTGGTGCCAGTGAAT
AAGGACGAGGGGACCACAACGCCCACGTCATCGCTGGCAATCAGGCAACG
CAGGGCGGTGATCGATACCGACTACACCTACCACTGCTATTCCGTTCAGG
TTTCAGTGAATGGCACAATGTCGACGGATCGCGGCTGCTCCCGGGTGAGC
ACCATGGAAGGTGTTTGCGAGCAGCTAAAGATTCAGAACAAAAACACGGA
GCTGGCCAACTGCAATCCGTGCAGTATGAACGCCTGTAACGGCAGCTCGG
CGCTCCAGAGCTCCATTCTGGCCACCCTGCTCCTGGCCATCGTGGCATTC
GCCCTGCAGCGCAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACT
AGCCTAGGAGATCCTGTCATGACTAGTGCTTGATTCTCACAATAAAAAAC
GCCCGGCGGCACCGAGCGTCTGAACAAATCCAGATGAGTTCTGAGTCATA
CTGATCTATCACAGAGTCAAGCGAGCTCGATTCAATACGGCCCGCCCTGC
CACTCATCGCAAGTAACTGTGAAATCAATAAAGCAATCCT
UFO02112.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7778-RB | 2152 | CG7778-RB | 185..992 | 8..815 | 4040 | 100 | Plus |
| CG7778-RA | 1237 | CG7778-RA | 185..992 | 8..815 | 4040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8349072..8349611 | 67..606 | 2700 | 100 | Plus |
| 2L | 23513712 | 2L | 8349742..8349952 | 605..815 | 1055 | 100 | Plus |
| 2L | 23513712 | 2L | 8346804..8346865 | 8..69 | 310 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:42:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2463 | 167..253 | 113 | 60.2 | Plus |
UFO02112.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:13 Download gff for
UFO02112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7778-RA | 184..991 | 8..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:47 Download gff for
UFO02112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7778-RA | 185..992 | 8..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:18 Download gff for
UFO02112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7778-RA | 185..992 | 8..815 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:18 Download gff for
UFO02112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8346804..8346865 | 8..69 | 100 | -> | Plus |
| 2L | 8349075..8349611 | 70..606 | 100 | -> | Plus |
| 2L | 8349744..8349952 | 607..815 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:47 Download gff for
UFO02112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8346804..8346865 | 8..69 | 100 | -> | Plus |
| arm_2L | 8349075..8349611 | 70..606 | 100 | -> | Plus |
| arm_2L | 8349744..8349952 | 607..815 | 100 | == | Plus |
