UFO02113.5prime Sequence
1103 bp (978 high quality bases) assembled on 2008-12-21
> UFO02113.5prime
CAGTCGACATGATTATTCCAAAAATGTCGAGGCATGCTCTGATAGGTGGT
GGCACTGGCTTCATCGGTCGCAACCTGGCTAACCATTTGACCAAAAAGGG
TTACGATGTGACGGTGATCTCCCGCATGCCAGGTGCGAAGCGTATCACCT
GGCACGAGCTGGAGAAGAATGGTATTCCCGGATCCGTAAACGCCGTGGTA
AATGCCACGGGCCAGAACACATTGGATCCAACGAGACGCTGGACTCCAGG
ATTCCAGCAGAATGTGTGGAACTCGCGAATCAACTCCTCAAAAACTTTGG
CTCAGGCTATTAAGTCGGCTCCCCAGGTCTCATCTTTCGTGAATCTATGC
GGTGTGAGTCACTATAAACCCTCGGAGTCCAAGGTTTACACCGAGGAGGA
TCAGGTGCAAGGATTCGACTACATGTCCAGGTTGTGCTTGGCCTGGGAGG
AGGCTGCACACACTGGTAGTGAGCAGGATTGTAAAACCACCATCCTGCGG
TGTGGCGCTGTTGTGGGTCATGGCGGGGGCATGGTTCAGTCCATGTGGCT
GCCCTTTAAGTTTGGCGTAGGAGGACCATTGGGTAATGGAAACCAAATAA
TGCCATGGATACACCTGCACGATCTGTGCAGCTTGATACAGTACATCATA
GAGAAACCAGTGCCAGGAGTGGTCAATGCGGTGGCCCCAGAAATAACCAG
CAATTTGGAGTTTAGCAAAGCCTTTGCCAAAGCACTTCATCGCCCGTGTA
TCTTCGGCGTTCCAGAGTTTGTTGTCCAAGCCATCTTTGGACCAGAGCGG
GCAGCTCTGGTTTTAAGTGGTGCCCAGGTCAAGCCACAGAAAGCTCTATC
ATCCGGGATTTAAATTTCAATATCCCAGCGTCAAAGAGCTGTGACGCAAC
TGACCCTCAAAGGAGCAAGCTTTCTAGACCATTCGTTGGCGCGCGGGCCC
AGTTAGTGGTCATATCATAATCATAAATCATAATCATAATCACCACTAGC
CTAGGAAATCCTGGTCATGACTAGTGCTTGATTCCTCACCAATAAAAACC
CCGGCGCACCGAGCGTTCTGAACAATCAGATGGAGTTCTGAGTCATACTG
ATC
UFO02113.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8768-RA | 1210 | CG8768-RA | 72..977 | 9..914 | 4470 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12692081..12692525 | 488..44 | 2225 | 100 | Minus |
| 2R | 25286936 | 2R | 12691791..12692022 | 720..489 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 12691541..12691735 | 914..720 | 865 | 98.5 | Minus |
| 2R | 25286936 | 2R | 12692581..12692619 | 47..9 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:42:15 has no hits.
UFO02113.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:00 Download gff for
UFO02113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8768-RA | 66..978 | 4..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:44 Download gff for
UFO02113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8768-RA | 68..980 | 4..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:17 Download gff for
UFO02113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8768-RA | 68..980 | 4..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:17 Download gff for
UFO02113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12691541..12691735 | 720..914 | 98 | <- | Minus |
| 2R | 12691792..12692022 | 489..719 | 100 | <- | Minus |
| 2R | 12692081..12692523 | 46..488 | 100 | <- | Minus |
| 2R | 12692583..12692623 | 4..45 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:44 Download gff for
UFO02113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8579046..8579240 | 720..914 | 98 | <- | Minus |
| arm_2R | 8579297..8579527 | 489..719 | 100 | <- | Minus |
| arm_2R | 8579586..8580028 | 46..488 | 100 | <- | Minus |
| arm_2R | 8580088..8580128 | 4..45 | 92 | | Minus |
