UFO02117.5prime Sequence
1116 bp (1033 high quality bases) assembled on 2008-12-21
> UFO02117.5prime
CAGTCGACATGTTCAGCTCGATTTCAGCTTCCTTGAAGAACTTCGGTGAC
AAGACCGCCAACCTCTTCAGCAAGAAGAAGGATGAGGCCGAGAAGCTGGC
CAACGAGAAGGCTGCCGAGGCCCAGAAGCTAGCCGAGGAGCAGGCCAAGA
AGGTGGGCCAGTCCGTACAGCAGACCAAGGGCGAGGCCGAGCAGTTGGCC
GCCAGCACGGCCAAGGAAGCCGCTGCTCTGGCCACCGCGGAGGCTCAGAA
GGCTGGACAGGCGATTGACCAGGGTGTGAACCGTGCCGCCGGAGCCGTCA
ACCAAGGCAAGCAGGCGGTGGACAACACGGTGGCCCAGGCGGCGGCCGTG
GCCCAGAACTCCAAGCAGGTGGCGGCCAATGTGGCGGAGGCCTCCCAGCG
AGCGGCCGCCAATGCGGTGGACCAGACCAAGAAGGCGGCCAACGACGCCA
TCAACAAGAGCGTGAAGGCCGCCGAGAACGTGGCGGACCAGAAGCTGAAG
CAGGCGGAGGGCGCCATCGATGGGGCACTGAAGCAGACCAGTCAAACGGT
GGACCAGAAGCTGCAGGAGGCCAACCAGTATGTCGACCAGAAGCGCCAGT
CCGTCGAGAAGACCGTCCAGGATGCGGCCGGACAGGCCCAGGAGTCTGCC
GGACAGCAGGCCAACGCCCTGTTGGGCAAGCTGCATCTGGGTCAGAAGGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCAC
TCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGCAGCCA
TCACAAACGGCATGATGAACCTGAATCGCCAGCGCATCAGCACCTGTCCG
CCTTGCGTATAATATTTGCCCATGTTAACGGGAGCGAGAGCTGTCCATAT
TGCACGTTAATTGACT
UFO02117.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1648-RC | 1392 | CG1648-RC | 196..885 | 9..698 | 3450 | 100 | Plus |
| CG1648-RA | 1047 | CG1648-RA | 196..885 | 9..698 | 3450 | 100 | Plus |
| CG1648-RB | 884 | CG1648-RB | 52..722 | 28..698 | 3355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9811481..9811969 | 698..210 | 2445 | 100 | Minus |
| 2R | 25286936 | 2R | 9812482..9812667 | 210..25 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:44:44 has no hits.
UFO02117.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:20:53 Download gff for
UFO02117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1648-RA | 184..883 | 1..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:32 Download gff for
UFO02117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1648-RA | 186..885 | 1..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:36 Download gff for
UFO02117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1648-RA | 186..885 | 1..698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:36 Download gff for
UFO02117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9811481..9811968 | 211..698 | 100 | <- | Minus |
| 2R | 9812482..9812664 | 28..210 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:32 Download gff for
UFO02117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5698986..5699473 | 211..698 | 100 | <- | Minus |
| arm_2R | 5699987..5700169 | 28..210 | 100 | <- | Minus |
