UFO02121.5prime Sequence
1064 bp (972 high quality bases) assembled on 2008-12-21
> UFO02121.5prime
CAGTCGACATGGATATAACGGTACCGCCGCCGGACTCGCACTGGTCGTTG
AGGTTTGTGGACATCGTGAAGCCTTTTCCAAAACATACTTTGGCCAATGC
CACTTATAAGATCATTCGCTTCTTTTACCCACCCTTTGCCCTGGAAACCG
TCGATGTCACCCACGTGGTCAGCGATCCCGAGCTGAATAGTTTAAACGTG
GGGCTGTTTGTGGTAGTTCCCTTAATTCTGGCCTGCATCGGCTATGGGGT
GTACAAATATGTGCGGAGTATGCATACAGTGGCTAAACGGACACCATTAA
AATTGTACGAGCTTGAACAGCGTATGAAAGACAAGTACGGTCCGGAATAC
AAGCAGGGAATCTGGAAGCGAAAGGACATTTCTGACCCCCTCCTATTAAC
CACTGATCCATCCGAACCAAAAGCAAAGAGATGTGAAAGCAGCAATGCCC
ACTGGCTGCGCAAAACCGATAGATCCGATGATGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATG
ATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAAT
ATTTGCCCATGGTGAAACGGGGGCGAAGAGTTGTCCATATTGGCCACGTT
TAATCAAACTGGTGAAACTCCCCCAGGATTGCTGAGACGAAAACATATTC
CTCAATAACCCTTTAGGGAATAGCCAGTTTCACCGTAACGCCCATCTGCT
AATATTATGTGTAGACTGCCGAATCGTCTGGTATCCCTCTGAGCGATGAC
CGTCGTGCTCATGA
UFO02121.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32450-RA | 821 | CG32450-RA | 117..590 | 9..482 | 2370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22329894..22330157 | 9..272 | 1320 | 100 | Plus |
| 3L | 28110227 | 3L | 22330216..22330426 | 272..482 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:43:20 has no hits.
UFO02121.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:20:49 Download gff for
UFO02121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32450-RA | 117..595 | 9..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:54 Download gff for
UFO02121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32450-RA | 117..595 | 9..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:51 Download gff for
UFO02121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32450-RA | 117..595 | 9..490 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:51 Download gff for
UFO02121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22329894..22330157 | 9..272 | 100 | -> | Plus |
| 3L | 22330217..22330426 | 273..482 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:54 Download gff for
UFO02121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22322994..22323257 | 9..272 | 100 | -> | Plus |
| arm_3L | 22323317..22323526 | 273..482 | 100 | == | Plus |
