UFO02122.5prime Sequence
1087 bp (879 high quality bases) assembled on 2008-12-21
> UFO02122.5prime
CAGTCGACATGAGAAGGCACTTGCGGGCAAGTCTTTGGATCCTTTGTTTG
GCCACCATGGCGTTTTCCATCCTTGCGGCAGTAAATACTTCGCCCAAACC
AACGCTGACTTCGGCGTTTAGTGGAAAAGCTGGCACCACTGCCGTGAAGG
CGAATAAGACGACGGGTGAGCTGCTGCCCATGGTCATTAACACTTGGAAC
TTCACGGCTGCCAATGTGCTCGCCTGGCGAATCCTGAAGCAAAGCAAGGG
TGGACTCCGGCAGACGCGGAATGCGGTAGTGGAGGGCTGCTCGAAGTGTG
AGAAACTCCAGTGTGACCGAACGGTGGGCTATGGCGGATCGCCGGACGAG
TTGGGCGAAACCACACTGGATGCCATGGTCATGGACGGGGCCACCATGGA
TGTGGGGGCAGTGGCTGGTCTGCGACGCATTAAGGATGCCATTAAGGTAG
CCCGGCATGTTCTGGAACACACGCAGCACACCATGCTGGTGGGTGATGCG
GCGTCAGCTTTCGCCAATGCTATGGGATTCGAATCAGAGTCGCTGGTCAC
GCCGGAGTCGAAGGACATGTGGTTACAGTGGACGGCTGAGAACTGCCAGC
CAAACTTCTGGAAAACGTTCACCCGGATCCCAGGTCTCTTGCGGCCCGTA
TAAGCCGCGGCCGACTCCGCTGACCCGCTGGAAGGAGGACCGTGCCCGCA
ATGAGTATGAGATCGGGACGCAGAACCACGATACCATCGGCATGATCGCC
ATCGACGTGGAAAGCAACATCCACGCCGGCACCTCCACCAACGGGGCGCG
GCACAAGAATCCCGGACGGGTCGGCGACTCCCCCATTCCGGGTGCTGGCG
CTTATGCAGACAACGAGGTGGGGTGCAGCCTTGGCAACGAAATGGAGATG
TGATGATTGCGCTTCCTGCTCTCCTGCTAGCGTGGAAACCATGCGGGCGG
AAAACTTCTCGCCTGAAGCACTCAGAAGGGCCTTCCCGCCTTCTCTCAGC
ACCAAGGAATTATGGGTGCCTCCTATTCGCGTAAATCGGCTGATAATTTG
GCGCTTGCTGCTAAGGCCTGTCGAATTCCCTTTATGG
UFO02122.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1827-RD | 1341 | CG1827-RD | 100..1190 | 8..1087 | 4570 | 95.8 | Plus |
| CG10474-RA | 1273 | CG10474-RA | 256..419 | 366..529 | 235 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9589314..9590152 | 120..954 | 3675 | 97.7 | Plus |
| 2R | 25286936 | 2R | 9589149..9589262 | 8..121 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 19286249..19286412 | 529..366 | 235 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:38:26 has no hits.
UFO02122.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:04 Download gff for
UFO02122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1827-RC | 44..1010 | 8..970 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:21 Download gff for
UFO02122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1827-RD | 100..1066 | 8..970 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:05 Download gff for
UFO02122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1827-RD | 100..1066 | 8..970 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:05 Download gff for
UFO02122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9589149..9589262 | 8..121 | 100 | -> | Plus |
| 2R | 9589316..9590148 | 122..949 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:21 Download gff for
UFO02122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5476654..5476767 | 8..121 | 100 | -> | Plus |
| arm_2R | 5476821..5477653 | 122..949 | 98 | -> | Plus |
