UFO02124.5prime Sequence
1088 bp (1006 high quality bases) assembled on 2008-12-21
> UFO02124.5prime
CAGTCGACATGAAAACAAAAGATGAGAAGCCATCGCCTTTGAAAACTGCA
CCGCGTAAAATAAAGGGTGAGAATTTTCCAGCCAGAAGGATACCCGCAAA
TGTTTTGAAACGCACGCTTGAGATCGCCACCAGTCCCGAAGATGGCTTTT
GGGTGAACCAAAACCCATCCTGTGCTCCTCCGGCCAGTAACGAGTTTTAC
TTCAGCGTTCGACGATCCACTGCGTACGAGAAACTACGACTGGCCCGGGA
TTGCCTTATGCAGCGGGACTACAAGAACTTGGCAAAAATACTGGCCTCCA
ATCATATGGGAGAAACGCTGCTCCAAAGGGCGTCCTTTCAAATATTCACG
GAATACTCCAAGGTTCTTCAAAAGTGCCCAAAGTTCTACACGAAAATGGA
GCAGTTGCGAGTGGAGCCGACTCCTCCGACGAGACCCACAGATGAAGACA
TAGCATTAGACGATTCATTAAATGCTATTCTATCCGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGC
ATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAT
ATATTTGCCCATGGTGAAAACGGGGCGAAGAAGTTGTCCATATTGGCCAC
GTTTAAATCAAACTGGTGAAACTCACCCAGGGATTGCTGAAACGAAAAAC
ATATCTCAATAAACCCTTTAGGGAAATAGCAGCTTCACGTACACGCCACA
TCTGCGATATATGTGTAAGAACCTGCGAATCGTCTGTATCACTCAACGAT
GAACGTCAGTGGCCATGAACCGGTACAGTGAACTATCC
UFO02124.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| udd-RA | 989 | CG18316-RA | 72..548 | 9..485 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8106456..8106932 | 9..485 | 2385 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:38:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 935..971 | 258..294 | 113 | 78.4 | Plus |
UFO02124.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:01 Download gff for
UFO02124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18316-RA | 31..512 | 9..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:16 Download gff for
UFO02124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18316-RA | 72..553 | 9..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:58 Download gff for
UFO02124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| udd-RA | 72..553 | 9..493 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:58 Download gff for
UFO02124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8106456..8106932 | 9..485 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:16 Download gff for
UFO02124.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3993961..3994437 | 9..485 | 100 | == | Plus |
