UFO02126.5prime Sequence
1088 bp (978 high quality bases) assembled on 2008-12-21
> UFO02126.5prime
CAGTCGACATGTTGGCTCTGGCCAGGAATTCGTGGTGTGGCCAATTGCTG
TGTCGCGTGGCGAACATCGAAGCCCGCTGCCCGTTCTCGAAGTCATCATC
CGGCGGAAAGCAGGCCGAGAAGAAGGGCAAGTACAGGATTGTGATGGTTC
GTCATGGAGAGTCCGAATGGAATCAGAAGAACCTATTCTGCGGATGGTTC
GATGCCAAGCTATCGGAGAAGGGGCAGCAGGAGGCCTGTGCCGCTGGCAA
AGCGCTCAAAGATGCCAAAATTGAGTTCGATGTGGCCCACACCTCGGTGC
TGACCAGAGCCCAGGAGACACTCAGGGCCGCCCTAAAGTCCAGCGAGCAC
AAGAAGATTCCGGTGTGCACCACGTGGCGCCTCAACGAGCGCCACTACGG
CGGACTGACGGGACTGAATAAGGCCGAGACCGCCAAGAAGTTCGGCGAGG
AGAAGGTTAAGATCTGGCGCCGCAGCTTTGACACCCCACCGCCGCCAATG
GAGAAGGATCACGAGTACTACGCCTGCATTGTTGAGGATCCGCGCTACAA
GGACCAACTGAAGCCGGAGGAGTTCCCCAAATCCGAGTCCCTCAAGCTCA
CCATCGAGCGCACCTTGCCCTACTGGAACGAGGTCATAGTGCCCCAGATC
AAGGATGGAATGCGTGTCCTGATCGCCGCCCACGGCAACAGCCTGCGGGG
CGTGGTCAAGCACTTGGAATGCATCTCTGACAAGGACATTATGAGCCTCA
ACCTGCCCACTGGCATTCCTTTCGTCTACGAACTAGACGAGAGCCTCAAG
CCTTTGGGCCACGTTGAAGTTCCTCGGCGATCCGGAGACGTGAAGAGGCA
TGGAGTCGTTGCCAACCAGGCAAGCCAAGGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATATCATTAT
CATAATTCACAACTAGCCTAGAGATCCTGTCATGACTAGTGCTTGGATTC
TCACCATAAAAACGCCCGCGCACCGGACGTCTGACAAATCCAGAATGAGT
CTGAGTCATTACTGATCTATCACAGGATCAAGCGAGCT
UFO02126.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pglym87-RA | 1085 | CG17645-RA | 53..928 | 9..879 | 4195 | 99.1 | Plus |
| Pglym78-RC | 1042 | CG1721-RC | 115..835 | 126..846 | 1125 | 77.7 | Plus |
| Pglym78-RB | 1022 | CG1721-RB | 95..815 | 126..846 | 1125 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12231847..12232677 | 840..9 | 4110 | 99.9 | Minus |
| 3R | 32079331 | 3R | 29149011..29149498 | 225..712 | 790 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:59:01 has no hits.
UFO02126.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:20:42 Download gff for
UFO02126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pglym87-RA | 77..952 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:53 Download gff for
UFO02126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pglym87-RA | 53..928 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:47 Download gff for
UFO02126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pglym87-RA | 53..928 | 9..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:47 Download gff for
UFO02126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12231802..12232677 | 9..879 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:53 Download gff for
UFO02126.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8057524..8058399 | 9..879 | 99 | | Minus |
