UFO02130.5prime Sequence
1107 bp (1014 high quality bases) assembled on 2008-12-21
> UFO02130.5prime
CAGTCGACATGGGCAAGCCAAGAGGTCTGCGCACTGCCAGGAAGCATGTG
AACCACCGTCGCGACCAGCGTTGGGCCGACAAGGACTACAAGAAGGCTCA
TTTGGGCACCAGATGGAAGGCTAATCCCTTCGGAGGTGCTTCCCACGCCA
AGGGAATCGTCCTGGAGAAGGTCGGCGTCGAGGCCAAGCAGCCTAACTCT
GCCATCCGCAAGTGCGTGAGGGTGCAGCTCATCAAGAACGGCAAGAAGAT
CACCGCCTTCGTGCCCCGTGACGGTAGCTTGAACTACATTGAGGAGAACG
ACGAGGTCCTGGTTGCCGGTTTCGGTCGTAAGGGTCATGCCGTCGGTGAT
ATTCCCGGTGTGCGCTTCAAGGTTGTCAAGGTCGCCAACGTCTCCCTGTT
GGCCCTCTACAAGGAGAAGAAGGAACGCCCAAGATCTGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGT
ACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACG
GCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGT
ATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGG
CCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACG
AAAAACATATTCTCAATAAACCCTTTAGGAAATAGGCCAGGTTTCACGTA
CACGCCACATCTGCGATATATGGTGTAAGAACTGCGAAATCGTCGTTGTA
TCACTCCAGAGCGATGAACGTTTCAGTGCTCATGAACGGGTGTACAGTGA
ACCTATCCGATCACCAGCTCACCGTCTTTCATGGCATCGAGTCGATGACC
ATCATCA
UFO02130.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS23-RA | 865 | CG8415-RA | 95..523 | 9..437 | 2145 | 100 | Plus |
| RpS23-RB | 553 | CG8415-RB | 46..474 | 9..437 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14215438..14215702 | 437..173 | 1325 | 100 | Minus |
| 2R | 25286936 | 2R | 14215951..14216111 | 172..12 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:58:48 has no hits.
UFO02130.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:20:39 Download gff for
UFO02130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS23-RA | 95..523 | 9..437 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:46 Download gff for
UFO02130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS23-RB | 46..474 | 9..437 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:41 Download gff for
UFO02130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS23-RB | 46..474 | 9..437 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:41 Download gff for
UFO02130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14215438..14215702 | 173..437 | 100 | <- | Minus |
| 2R | 14215951..14216114 | 7..172 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:46 Download gff for
UFO02130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10102943..10103207 | 173..437 | 100 | <- | Minus |
| arm_2R | 10103456..10103619 | 7..172 | 98 | | Minus |
