UFO02133.5prime Sequence
1113 bp (1001 high quality bases) assembled on 2008-12-21
> UFO02133.5prime
CAGTCGACATGGCCAACATTGCTAAGATCTTCGCTAGCCGCGCCCAGTGC
GTCCTGCAGGCAGCCGCCCGTCAGCCACAGGTGGCCACCCGTTTCAGCAG
CTCCTCCACCAACAACAACTGGGAGTACATCAAGACCGAAGTGGCCGGCG
AGGGCAAGAACGTAGGCGTGATCACCCTGAACCGCCCCAAGGCCCTGAAT
GCCCTCTGCAATGGCCTGATGAAGGAGCTGTCCACCGCATTGCAGCAATT
CAGCAAGGATAAGACCATCTCCGCCATCGTTTTGACGGGCAGCGAGAAGG
CCTTCGCCGCTGGCGCTGATATTAAGGAGATGGTGGGCAACACCTACTCG
CAGTGCATCCAGGGCAACTTCTTGAACGACTGGACAGAGGTGGCCCGCAC
CCAGAAGCCCATCATTGCTGCCGTGAATGGTTACGCCTTGGGCGGTGGCT
GTGAGCTGGCCATGATGTGCGACATCATATATGCCGGTGACAAGGCCAAG
TTTGGTCAGCCTGAAATTGCCCTGGGCACCATTCCCGGTGCCGGTGGCAC
CCAGCGTCTGACCCGCGTCGTTGGCAAGTCCAAGGCCATGGAAATGTGCC
TCACCGGCAATATGATCGGCGCCCAGGAGGCTGAGAAGCTGGGTCTGGCC
AGCAAGGTGGTGCCCGCCGACCAGTTATTGGGCGAGGCCGTCAAGCTGGG
CGAGAAGATCGGCACCCACTCCAATCTGATCGTGCAGCTGTGCAAGGAGG
CGGTTAACACGGCTTACGAGACCACTCTCCAAGAGGGCCTGAAGTTCGAG
CGTCGCACCTTCCATGCCACGTTCTCCACGGCCGATCGCAAGGAGGGCAT
GACCGCTTTCGCCGAGAGCGCCCTGCCAAGTTTACCACGAGGCAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTTGTCATATCATAATC
ATATCATATCATAATCACACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTGATTCTCACCAATAAAAACGCCCGCGCAACGACGTCTGAACAATTCGA
ATGGGAGTTCTGAGTCATTACTTGAACTTATCAACGGAATCAAGCAGCTC
GATTCAATACCGC
UFO02133.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6543-RA | 1051 | CG6543-RA | 61..940 | 9..887 | 4375 | 99.9 | Plus |
| CG6543-RB | 1124 | CG6543-RB | 134..1013 | 9..887 | 4375 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13853180..13853905 | 831..106 | 3630 | 100 | Minus |
| 2R | 25286936 | 2R | 13854102..13854198 | 105..9 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 13853058..13853116 | 887..830 | 245 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:43:54 has no hits.
UFO02133.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:20:34 Download gff for
UFO02133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6543-RA | 69..962 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:14 Download gff for
UFO02133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6543-RB | 125..1018 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:05 Download gff for
UFO02133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6543-RB | 125..1018 | 1..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:05 Download gff for
UFO02133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13853053..13853115 | 831..891 | 96 | <- | Minus |
| 2R | 13853181..13853905 | 106..830 | 100 | <- | Minus |
| 2R | 13854102..13854207 | 1..105 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:14 Download gff for
UFO02133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9740558..9740620 | 831..891 | 96 | <- | Minus |
| arm_2R | 9740686..9741410 | 106..830 | 100 | <- | Minus |
| arm_2R | 9741607..9741712 | 1..105 | 96 | | Minus |
