UFO02135.5prime Sequence
1120 bp (1024 high quality bases) assembled on 2008-12-21
> UFO02135.5prime
CAGTCGACATGACAGGCAAACTTCTACTGGCCACGATCCTGTGCCTAATG
GGCGGCCAAGCCTTGGGCGATGCGATTCTGGAAGGAAACTACAACGTTAC
GGCCGTCTGCACGGCGGTTAAGGTCGGAACGCAGCTGGGCAGCATCGAAT
CCTGCCAGACGTACTACGTCTGCCAGTCCACCGGACCCGTGCAGTCCTCG
TGCCAATCAGGCTACTCGTACGACTACAAGAGATCCTCCTGCTATCCAAG
CAGCGAGGTGGACTGCTATTGGGGCGTTGAGAATCCCTGTGCTGGCAAGA
ATAACACCTGGGTGCCAAACACTGCCGTTTGTGGTGGATGGTTCTACTGC
CTTGAGGGCAAGTCGGCGGGCTCCGGAAACTGCCCGGTGAACCAGAAATT
CGATACCACCACACTCGCCTGCGTTTATGGAACCTGCTCCAACACTCAAG
GTACTAATGAAACCGTGCTAGAATCACTATGCGATGTCGTGCCACCTGGC
CAATATTTCGGCGATACTGAGAGCTGCTCCACCTGGCACTACTGCGAGTC
CACCTCCACCGGACTCGTTTTGCAGTCGGGTAAATGCTCTGCAAACAATC
AAACTGCATACAACGTGCTCGCCAATCAATGTACCTACGAAAGTGCCTCC
GTCTGCAGCCGTGTGACCAACATTCCGCTGAGCGATGCCGCAGTTTCCTG
CTCCACGAACGGTGCCAAGTCAGCCGATCCCAAGGTGTGTGGCACCTATT
ATGTGTGCACGAACGGCAAAAATGTGGCCACCTACTGCCCCACTGGCGAC
TACTACGACGACAGTTTAGGGTACTGTGTGTCCCGCCAGGTCGCCACTCC
GGTGGCGGGATGCAATCGATGCCAGTATGCTACGTCGACGTTTGTAAACG
CCGTCGATTCGAATACTGCTCCACTACTACTATTGCAACAGCCAGGGCGA
GGCCACTTTGAACACCTGCCCGGCCGATCCATTCTTCGATGAGTCACGTC
AGGATGCAAGTCCGACGACGACTGTCAATATGTGCATTGAACGGAGCTGC
AAGGACCACCGCCGAGATCGAAAACGATAAAAGTACGACCGATGCGAGCC
AGCCTTCTGAACATTCGTTG
UFO02135.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7298-RA | 1323 | CG7298-RA | 86..1188 | 9..1095 | 5110 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20202913..20203506 | 606..13 | 2970 | 100 | Minus |
| 3L | 28110227 | 3L | 20202291..20202710 | 1022..606 | 1935 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:34 has no hits.
UFO02135.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:20:46 Download gff for
UFO02135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-RA | 85..1197 | 9..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:41 Download gff for
UFO02135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-RA | 86..1198 | 9..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:10 Download gff for
UFO02135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-RA | 86..1198 | 9..1104 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:10 Download gff for
UFO02135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20202195..20202710 | 606..1104 | 95 | <- | Minus |
| 3L | 20202914..20203508 | 10..605 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:41 Download gff for
UFO02135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20195295..20195810 | 606..1104 | 95 | <- | Minus |
| arm_3L | 20196014..20196608 | 10..605 | 99 | | Minus |
