UFO02136.5prime Sequence
1114 bp (1010 high quality bases) assembled on 2008-12-21
> UFO02136.5prime
CAGTCGACATGAGGCATCTGATGTTCCTAATGCTGATGGTCCTGCCCATC
GTCATCTGCACCTTCTCGGCGCCCAACAAGTTTGGAGCCTATGCCGCCGA
GGCCGTGGAGGACGACCTGGTGGACGTGGAGGGCGAGGAGGGTGCCGTTA
CTGGCGAGGATGCAGAAGCGGACGAGGATAGCGACACGGGCAGCAGCAGT
TCGCCGAATGCGGACACCTATCTGTTATTCACGAAACCCCTGTACACACC
TGGCCAGCAGCTGGATCTGCCCGGCGGCAAACCCGTCGAGTTCCTGATTG
GATTCACCAACAAGGGAGCCGAGGAATTCGTGATCGAGACGGTGGAGGCC
TCCTTCCGCTATCCCATGGACTTCAACTACTTCATCCAGAACTTCTCGGC
GGTGGCCTACAATCGTGAGGTGAAGCCCGGCTTTGAGTCGACCGTGTCGT
ACACCTTCCTGCCCTCGGATCAGTTTGCCGGCCGTCCATTTGGACTGAAC
ATTGCACTGGCCTACCGCGATGCCAATGGTATTCAGTACAACGAGGCCGT
GTTCAATGAGACCGTTCTGATTTCGGAGGTCGATGAGGGTCTGGATGGCG
AGACTTTCTTCCTGTACGTCCTGCTGGCGGGCATTGTGGTCCTGCTACTG
GTCATCGGACAGCAATATCTGCTCGGCAGCTCTGGCAAGAGGAAGCGTGC
CGCTGCCAAGAAGGTGATCGAAACCGGCACGGCCAACGACAGCACCATCG
ACTACGATTGGGTGCCACAGGAGACGCTGCGTGCGCTGCAGAAGTCGCCG
CCCAAGTCCAAAACGCCCAAGACCTCGCCCAAGCCCACCAAGCCGGCCAG
TCCCAAGGCGGCCAGCCAGCAGAGTCCCAAGCAGCGCAAGGTCAGCGTTC
CGCTGGCGATGATGCAAGCTTTCTAGACCATTCGTTTGGCGCCGCGGGCC
CAGGTAGTGTCATATCATATCATATCATATTCATATCACACTAGGCTAGG
AGATCTGGTCATGACTATGCTGGATCTCACCATAAACGCCCGGCGGCAAC
CGAGCGTCTGACATTCCGATGAATCCTGAGGTCATACTGGATCTATCAAC
GGAGTCCAGGCGAG
UFO02136.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0320-RB | 1854 | CG32701-RB | 147..1052 | 9..913 | 4505 | 99.9 | Plus |
| l(1)G0320-RA | 1309 | CG32701-RA | 236..1141 | 9..913 | 4505 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9551942..9552783 | 913..73 | 4160 | 99.9 | Minus |
| X | 23542271 | X | 9553452..9553515 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:22:48 has no hits.
UFO02136.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:20:44 Download gff for
UFO02136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0320-RA | 149..1067 | 1..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:21 Download gff for
UFO02136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0320-RA | 140..1058 | 1..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:04 Download gff for
UFO02136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0320-RA | 229..1147 | 1..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:04 Download gff for
UFO02136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9551942..9552783 | 73..913 | 99 | <- | Minus |
| X | 9553452..9553522 | 1..72 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:21 Download gff for
UFO02136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9445975..9446816 | 73..913 | 99 | <- | Minus |
| arm_X | 9447485..9447555 | 1..72 | 94 | | Minus |
