UFO02137.5prime Sequence
1106 bp (1005 high quality bases) assembled on 2008-12-21
> UFO02137.5prime
CAGTCGACATGAATTTTCTGTGGAAAGGACGCCGGTTTCTGATCGCAGGC
ATCCTGCCAACATTCGAAGGCGCCGCAGATGAAATAGTCGATAAGGAAAA
CAAAACATACAAGGCCTTTCTGGCCAGTAAACCACCAGAGGAAACAGGAC
TGGAGCGCCTCAAGCAAATGTTTACAATCGACGAGTTTGGCAGCATATCC
TCCGAGCTTAACTCGGTTTACCAGGCCGGCTTCCTAGGATTCCTTATTGG
AGCTATTTACGGCGGAGTTACACAATCGCGCGTGGCCTACATGAATTTCA
TGGAGAACAACCAGGCCACAGCATTTAAATCGCACTTTGATGCCAAGAAA
AAGCTGCAAGATCAATTCACAGTCAACTTTGCCAAAGGCGGCTTCAAATG
GGGCTGGCGAGTGGGACTTTTTACCACATCCTACTTCGGCATCATCACTT
GTATGTCGGTGTACCGTGGAAAATCCTCAATCTACGAATACTTGGCCGCT
GGTTCCATCACCGGCTCGCTTTACAAAGTGAGTCTTGGTCTGCGGGGCAT
GGCGGCAGGTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGCTGGTGTGA
CGTCGCTGCTGCTGATGAAAGCATCAGGGACCTCGATGGAAGAGGTTCGC
TACTGGCAGTACAAATGGCGACTCGATCGCGACGAAAACATTCAACAGGC
GTTCAAAAAACTGACAGAGGACGAAAACCCAGAGCTTTTCAAGGCCCACG
ACGAGAAAACATCCGAACATGTATCGCTGGACACGATCAAGGCAAGCTTT
TTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAAATCATAATCACAACTAGCCTAGAGATCCTGGTCATGAC
TAGTGCTTGATTCCTCACCAATAAAAAACGCCCGCGGCAACCGGAGCGTT
CTGAACAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGA
GTCCAGCGGAGCTCGATATTCAATTTCGCCCGCTGCACTCATCGCCAGTA
CTTTTGTAATTCATAGCATTCTGGCGAACTGGAGCATCACAAACGCATTG
ATGACC
UFO02137.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 140up-RB | 1200 | CG9852-RB | 73..855 | 9..791 | 3915 | 100 | Plus |
| 140up-RA | 937 | CG9852-RA | 73..855 | 9..791 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14124508..14124862 | 791..437 | 1775 | 100 | Minus |
| 3R | 32079331 | 3R | 14125304..14125476 | 181..9 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 14125075..14125240 | 347..182 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 14124925..14125015 | 436..346 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:42:06 has no hits.
UFO02137.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:20:31 Download gff for
UFO02137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 140up-RA | 55..837 | 9..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:38 Download gff for
UFO02137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 140up-RA | 73..855 | 9..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:11 Download gff for
UFO02137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 140up-RA | 73..855 | 9..791 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:11 Download gff for
UFO02137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14124508..14124862 | 437..791 | 100 | <- | Minus |
| 3R | 14124925..14125013 | 348..436 | 100 | <- | Minus |
| 3R | 14125075..14125240 | 182..347 | 100 | <- | Minus |
| 3R | 14125304..14125476 | 9..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:38 Download gff for
UFO02137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9950230..9950584 | 437..791 | 100 | <- | Minus |
| arm_3R | 9950647..9950735 | 348..436 | 100 | <- | Minus |
| arm_3R | 9950797..9950962 | 182..347 | 100 | <- | Minus |
| arm_3R | 9951026..9951198 | 9..181 | 100 | | Minus |
