UFO02139.5prime Sequence
1139 bp (999 high quality bases) assembled on 2008-12-21
> UFO02139.5prime
CAGTCGACATGACCGATCCAAACGTGCCAAGAGGAGCCCTAAGCTTGCAG
AATGTTCTGAAATATACGGTGCAACACCACGATCCAAATCCAGAAGCAGC
CCCAAAGTTGGAAACTCCCGATCCTGAGAGAGCTCAGTTTTTGGCAAATG
CCCTAAATGCCATGACAGTGGATGCTGCAGCGGCCCTGAAAGCAGCTTTG
GTGATCTTGAACAGCGAAGAATCCAGCACGGACGACCAAATCGAGAGTCT
GGATGTCATAAGGAGCCACATCGATGACATCGACAATGCCATAACGCTGG
TGAAGCTAGGAGGAACTGCAACTCTACTCCGCTACATAACACATTCGGAT
AGCGAAGTGCGAGAATCGGCACTCAATACTGTCGCTGAAGTGGCCCAGAA
TAATGTATTTTGTCAGAACGCCCTCATAAACGATAAGTTTTTGCCTGCAC
TTGCAAAGAACTTGAGCCATTCGAATCCGAATACCGTGCGGTGCTCCTTG
TATGCGATATCATCGCTGATAAGGAACTTTCAGCCTGGATACGACGAGTT
TAAGCGCATAAAGGGGATCAGGTCCTTGATACCCTGTCTGAAATCCACAA
ATACAAATGTCTACGTGAAGACTGCTTTTCTAATTGCATCGTTAACTTCA
ATCGAGAAGTCTGTCAGAGATGATTTTGTGAAGGAAGAAGTGTTTCCTGT
GCTAGTGGAAAACCTTAAGCCCGTTGATGACTTTGATATCAAACAAGAAA
CTACGCTTTTTGCACTTTCATCTCTTTCGCGGGAATCGGAGTTAAAACTC
TCTACGGAAAAACGAGAGGAAATCCTATCGAAGCTTCAACAAATTATTTC
CAAAACAAACAGTCGGAAACGTGTGAAGACATGGTTTAATTATGCAGAAA
TATTTTTGACACTTAAGTGCACATGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAGTGGTCATAATCATAATCATATCATATCATAATC
AAACTAGCCTAGAGATCCTGTCATGACTAGTGCTGATTCTCACATAAAAA
ACGCCGGGCGGCACGAGCGTCTGAACAATCGAATGGAGTCTGAGGTCATA
CTGAATCTATACACGGGATCCAGGGCGAATCTTAGGCCT
UFO02139.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10973-RB | 1032 | CG10973-RB | 57..974 | 9..924 | 4495 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12753676..12754218 | 669..127 | 2715 | 100 | Minus |
| 3L | 28110227 | 3L | 12753404..12753615 | 878..668 | 1010 | 99.5 | Minus |
| 3L | 28110227 | 3L | 12754542..12754621 | 128..49 | 400 | 100 | Minus |
| 3L | 28110227 | 3L | 12754677..12754718 | 50..9 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:17 has no hits.
UFO02139.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:20:28 Download gff for
UFO02139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10973-RB | 11..931 | 9..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:51 Download gff for
UFO02139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10973-RB | 57..977 | 9..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:50 Download gff for
UFO02139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10973-RB | 57..977 | 9..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:50 Download gff for
UFO02139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12753405..12753613 | 670..877 | 99 | <- | Minus |
| 3L | 12753676..12754216 | 129..669 | 100 | <- | Minus |
| 3L | 12754542..12754619 | 51..128 | 100 | <- | Minus |
| 3L | 12754677..12754718 | 9..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:51 Download gff for
UFO02139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12746505..12746713 | 670..877 | 99 | <- | Minus |
| arm_3L | 12746776..12747316 | 129..669 | 100 | <- | Minus |
| arm_3L | 12747642..12747719 | 51..128 | 100 | <- | Minus |
| arm_3L | 12747777..12747818 | 9..50 | 100 | | Minus |
