UFO02141.5prime Sequence
1133 bp (1016 high quality bases) assembled on 2008-12-21
> UFO02141.5prime
CAGTCGACATGCTAAGCAAAACGGGGTTAATTGGCGCCTTGGTGCGTAGA
TCCTTCGGCACCAGTCAGATGTTGCGAGAGACGATCAAGAACCACGAGCC
AAACAATCTGGAGCGCCGTATGTTGGTTTGGACCGGCAAATACAAGTCGC
AGTCCGAGATTCCCAATTTCGTTAGTCAGGATGTCATGGAGCGCTGCCGC
AACAAAATGCGCATCCGCCTGGCCAACATAATGATCGCACTCACCGCCGT
GGGATGCGCCATTATGGTGTACAGTGGCAAGCAGGCCGCCAAGAAAGGAG
AATCCGTCACAAAGATGAATCTCGAGTGGCACAAACAGTTTAATGACTCT
CAGCAGAGCGAAGGATCTGCTCCGGCCGCCAAAGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
ATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCAT
GATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAA
TATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCAC
GTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAA
ACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAC
ACGCCACATCTTGCGATATATGTGTAGAACTGCCGGAAATCGTCGTGTAT
TCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAACGGTGTAC
AGGGTGAACACTATCCCATATCACAGCTCACCGTCTTTTCATGCATACGA
ATTCGATGACATTCATTCAGGGCGGCAGAATGGAAATAGGCGAATTAGAC
TTGGTGGCTTACTTCCTTACGGCTTAAGCGCCT
UFO02141.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9231-RB | 847 | CG9231-RB | 89..463 | 9..383 | 1875 | 100 | Plus |
| CG9231-RA | 814 | CG9231-RA | 56..430 | 9..383 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19585477..19585686 | 383..174 | 1050 | 100 | Minus |
| 3L | 28110227 | 3L | 19585749..19585915 | 175..9 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:42:03 has no hits.
UFO02141.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:20:25 Download gff for
UFO02141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 306..688 | 1..383 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:35 Download gff for
UFO02141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 48..430 | 1..383 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:09 Download gff for
UFO02141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9231-RA | 48..430 | 1..383 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:09 Download gff for
UFO02141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19585749..19585922 | 1..175 | 97 | | Minus |
| 3L | 19585477..19585684 | 176..383 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:35 Download gff for
UFO02141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19578577..19578784 | 176..383 | 100 | <- | Minus |
| arm_3L | 19578849..19579022 | 1..175 | 97 | | Minus |
