UFO02144.5prime Sequence
1160 bp (1043 high quality bases) assembled on 2008-12-21
> UFO02144.5prime
CAGTCGACATGAGTAATCTGGCGAGACGACCACTGCATGGTAACGAACCT
GGGGCTCTTTCCCAGTCAAAGGACGATGTGGACCAGGACCACTCCTACAA
TAGGCAGCCGGTACAAAGCTACGAGGAAGGGACATCTTCGGCCGACGAAC
TGGAAGAAAGTGAATCCCATGACGAACCCAGTATTCCCAAACCCACCGAT
CAGTCCAGAAGACGCAGTATTTCAACTTCTAGGCCGAGTTCAAGGCAGGA
GCAGCACAATTCTATCAATGAACATCACAACGGCATCGGTATTAAACTAG
CGCTTGCCGGTGTTCTATTTGGTTTATTGGTTGTCTATGGGTACGGATCC
AGCATTATAGAGGAGAAACAGTGTGACTTTAAGGATCTCAGGACAAAGTA
TCCCCAGCAGCAGGAAAAAGTATGGAGAGCCCTGCAAAAGGGGATCGAGG
GGCTGATTAACAAAAAGGACAAGCACCCCAGTGTATTTTTGTTCCTGCAC
CAGGATCCAAAGCTGGAGAAACTGATCGATGAAATTGCCATTGAGGCTTC
AATGTGCTTTGGTGGTCCCCGAAAGCTGATTCACATGAAGAAGGAGCACA
TGAAGGAATACGGTTTGGCGATTGAACAATTCAAATCAAAAATCAACGAT
GGAAAGGTTTTTTTAATAGTGAACCTAAATGAAATTGCGCCGAATGGAGC
TCGAGCCCTGCACACAATCTGCGATACCTACAGCCCTCTGGTGGAGGATG
CAGTCATCTTCCTCTCCCTTCGAACATTCAACACAACCGCCGTGAACAAC
TCCGTCAATCTAGCCACGGATACTCTGTACGATCTGTGGACCAGGAGTTG
GGGGACCACGAGCTGGATCCTTTAATTACTCGAGTTACTGATCAGGTGCT
CCATTTGAGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAGTGTCATATCATATCATATCATAATCATAATCACACTAGCCTAGAGAT
CCTGGTCATGACTAGTGCTTGATCCCACCATTAAAAACGCCCGGCGGCAC
GAGCGTTCTGACATCGAATGGGAGTTCTGAGTCATTTACTGATTCTATCC
ACGGAATCAGCGAGCTCGATCAATTAGCCGCCGGCACTATGCGGAATCGT
GTTGAATCTT
UFO02144.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14103-RB | 1221 | CG14103-RB | 52..954 | 9..910 | 4490 | 99.9 | Plus |
| CG14103-RA | 1036 | CG14103-RA | 52..954 | 9..910 | 4490 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19804475..19805029 | 563..9 | 2775 | 100 | Minus |
| 3L | 28110227 | 3L | 19804005..19804232 | 910..684 | 1090 | 99.6 | Minus |
| 3L | 28110227 | 3L | 19804288..19804410 | 683..561 | 615 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8307..8346 | 132..171 | 110 | 75 | Plus |
UFO02144.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:20:20 Download gff for
UFO02144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14103-RA | 41..949 | 9..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:26 Download gff for
UFO02144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14103-RA | 52..960 | 9..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:04 Download gff for
UFO02144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14103-RA | 52..960 | 9..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:04 Download gff for
UFO02144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19803999..19804232 | 684..917 | 98 | <- | Minus |
| 3L | 19804288..19804409 | 562..683 | 100 | <- | Minus |
| 3L | 19804477..19805029 | 9..561 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:26 Download gff for
UFO02144.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19797099..19797332 | 684..917 | 98 | <- | Minus |
| arm_3L | 19797388..19797509 | 562..683 | 100 | <- | Minus |
| arm_3L | 19797577..19798129 | 9..561 | 100 | | Minus |
