UFO02150.5prime Sequence
1120 bp (1037 high quality bases) assembled on 2008-12-21
> UFO02150.5prime
CAGTCGACATGGTTATTGGCGTCTTCCCGGCGGCCAAGCTCGGCATTTTG
GCCATCAAGCAGGTCAGCAAGCCGATAGCCAACGTGATTAAGTCCAATGC
CAAATCGAGCCCCTTCTTCAGGAAGTACATATGCATGCCGCCCGCACAGT
TCTACAACTGGGTAGAGGTGAAGACCAAGATGTGGGCCCTGAACATGGGT
GGTCGCGTTAATGTTCCACCGCTGAACGAGGCGATGGCCATTGAGCTGGG
AGCCAATCTGCTTGGCGAGTTCATCATCTTCTCGATCGGAGCCGGTCTTT
TGATTTTCGAGTACTCACGTCAAACCATCAAGGAGAACAAGAAAAACGAG
TTGGCGCAATCGGAGAAGATGGAACTAACCAATATGCTGACGGAGATGAA
CTTTCGGCTGGAGCGACAGGATGCCCAGATACGAGAAATGACGCGAGTGC
TGGCTGATCTAGATTCGCGAAACATTTTCCGGTGGCACAAGGAGCCGATT
CAGGAATACGTGCCCTTCGATCCCGACACGCCGGACCAGAGTGCCAGCGC
CAGGAATCCGAAAAAGTTCGACAGCTTATATGACCCGCAAGGCGGTATGG
CCTTCCGCGCCCTGCACTTCCTGGACACGCAGATCTTCGTGGACGGACGC
AACCGCAAGGCCAAGGAGGCTCTCCAGCACCTGGATGAGGTGGCCGTGCA
GCTGGAGCAGTCTCTGGGAGAGGCAGCCACCGTTGCCGTTGCCAGCTCAC
TGCCTACAAAAGCAGCCGACCTTGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCACAGAGTCCAAGCGAGCCTCGATA
TCAAATTACGCCCCCGCCCTGCCACTCATCGCAGTACTGTTGTATCATTA
GCATTCTGCCGACATGCAGGCCATCAAACGCATGATGAACTTGATTCGCA
GCCGGCATCAAACTTGTCCC
UFO02150.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13601-RB | 1091 | CG13601-RB | 67..831 | 9..773 | 3825 | 100 | Plus |
| CG13601-RA | 1091 | CG13601-RA | 67..831 | 9..773 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23926632..23926944 | 773..461 | 1565 | 100 | Minus |
| 3R | 32079331 | 3R | 23927203..23927371 | 319..151 | 845 | 100 | Minus |
| 3R | 32079331 | 3R | 23926998..23927145 | 466..319 | 725 | 99.3 | Minus |
| 3R | 32079331 | 3R | 23927427..23927568 | 150..9 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:28 has no hits.
UFO02150.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:20:13 Download gff for
UFO02150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13601-RA | 65..829 | 9..773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:37 Download gff for
UFO02150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13601-RA | 67..831 | 9..773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:07 Download gff for
UFO02150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13601-RA | 67..831 | 9..773 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:07 Download gff for
UFO02150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23926632..23926942 | 463..773 | 100 | <- | Minus |
| 3R | 23927002..23927144 | 320..462 | 100 | <- | Minus |
| 3R | 23927203..23927371 | 151..319 | 100 | <- | Minus |
| 3R | 23927427..23927568 | 9..150 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:37 Download gff for
UFO02150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19752354..19752664 | 463..773 | 100 | <- | Minus |
| arm_3R | 19752724..19752866 | 320..462 | 100 | <- | Minus |
| arm_3R | 19752925..19753093 | 151..319 | 100 | <- | Minus |
| arm_3R | 19753149..19753290 | 9..150 | 100 | | Minus |
