UFO02152.5prime Sequence
1121 bp (1023 high quality bases) assembled on 2008-12-21
> UFO02152.5prime
CAGTCGACATGCAGGAATTTTCAGCCAAACGAGACGCTCTTTTCGCATGT
CTCGACGATGCGAGCAAAGAGTTGCGGGGAACTGCCTTGGATCAGAGCAA
GGCCAAGGCGTTTTCCATCAATGCCCTCGATCGAGGAAACAAATCCGGAA
ACGAATCCGGACAGGTGATGAACTACCGCCAGGGTCGCAGCATTGTTACT
GGCCTCGATGCGGAGGATGGAAGACTGCGACGAATGCGCGGCAAGGAGAG
CATTTTCAAGAAGCCCGAACTCCCCATTGGACGCTGTTTGAAGCCAAGAA
AAACGCCAGATTACCAGGTAAACCCGCACAAATGGAAGAAGTACTCCCTG
TCTGATGTGGACATTTCCGAACAGAGCAACTCCGCCGCCGCCTTGTCCTT
CCTGCGACAAATGGATGCACAGCGCGAGGCTGAGGGCGTCGATAACGAAT
CTCCACCTACAGATGGCAAGATCGAGTTCAAGAGGACCAGCAAACTCAGC
CGCAAGCTCAAGAGCCTCAAACAGCAGGAGGTGGATGATGTGGAGCTGGA
TAAGCCGCAGTTAAGAGGTTCCAAGCTGGTGATGCCTGAGTATGTAATTG
GCCAAAAGCCGCATAAGCCAAAGAAATGCAAAACCAAATCGGAACAGAGC
CGTGCAGCGGGAAAACTACAACTGTCCCACTTGGCGGAGGAGGATGAGCA
GGATGATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCATTAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCTGCCACTCATCGCAGTACTGTTGTAATCATTAGGCATTCTGCGACAT
GGAAGCCATCCACAAACGGCATGATGACTGATCGCAGCGGCATCAGCACT
TGTCGCTTGGCTATAATATTTGCCATGGGTGAAACGGGGGCGAAGATTGT
CATATTGCACGTTAATCAACT
UFO02152.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6674-RA | 843 | CG6674-RA | 83..781 | 9..707 | 3495 | 100 | Plus |
| CG6674-RB | 786 | CG6674-RB | 389..724 | 372..707 | 1680 | 100 | Plus |
| CG6674-RB | 786 | CG6674-RB | 83..391 | 9..317 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9971213..9971604 | 707..316 | 1960 | 100 | Minus |
| 3L | 28110227 | 3L | 9971662..9971972 | 319..9 | 1555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:11:09 has no hits.
UFO02152.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:20:10 Download gff for
UFO02152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6674-RA | 72..783 | 1..715 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:27 Download gff for
UFO02152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6674-RA | 76..787 | 1..715 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:41 Download gff for
UFO02152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6674-RA | 76..787 | 1..715 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:41 Download gff for
UFO02152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9971207..9971602 | 318..715 | 98 | <- | Minus |
| 3L | 9971664..9971978 | 1..317 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:27 Download gff for
UFO02152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9964307..9964702 | 318..715 | 98 | <- | Minus |
| arm_3L | 9964764..9965078 | 1..317 | 98 | | Minus |
