UFO02153.5prime Sequence
1120 bp (1021 high quality bases) assembled on 2008-12-21
> UFO02153.5prime
CAGTCGACATGTCGTTTCATTTGAGCACAAAAGAGCGCCTTCTGCTCCTG
ATCGACGACATTGAGATGATTGCCAAGGAGTTGATCGAGCAGGCGCACCA
GAAGATCTCCAGCACCGAATTGGTGGACCTGTTGGATTTGCTGGTGGCCA
AAGATGAGGAATTTCGCAAAATGCTGGAACTGGCGGAGGAGCAGGCGAAA
GTGGAGGAGGCGATGGACCAACTGCGCGCTAAGGTCGAGGTGCACGACCG
TGAGATCCAGAAGCTGCAAAAGTCGCTAAAGGATGCGGAGCTCATACTGT
CCACGGCCATCTTCCAAGCGCGACAGAAACTGGCCAGCATCAATCAGGCC
AACAAACGACCGGTTTCATCCGAGGAGCTCATCAAATACGCACATCGGAT
TAGCTCCGCCAATGCGGTCAGTGCTCCGCTCACCTGGTGCATAGGTGACC
TGCGGCGTCCCTATCCCACGGACATTGAGATGCGCAACGGGCTGCTGGGT
AAATCCGAGCAGAACATCAACGGCGGAACAGTGACCCACCAGAACAGCGG
CATGCCCTCGGAGCAGCAGCGAACGCTGTCCGGTAGCGCAGGAAGTGGGA
GTGGCAGTGGCGCCGGCGGCGAGGTGCCCAATGCCTTCCAGAACCAGTTT
AACTGGAATCTCGGAGAGCTGCACATGACCATGGGCGCCTCTGGGAACAC
AGTGGCCCTGGAGACGCGCGCCCAGGACGATGTGGAGGTCATGTCCACGG
ATAGCTCAAGCTCCAGTTCCAGCGATTCGCAGGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAACGCCCGGCGGCACCGAGCGTTCTGAACAATCC
AGATGGAGTTCTGAGTCATTACTGGATTTTATCACAGAGTCCAGCGAGCT
CGATATTCAAATTACGCCCCCGCCTGCACTCATCGCAGTACTGTGTATTC
ATTAAGCAATTCTTGCGAACTGCAGCCATCAAAACCGCCATGATGACTGA
TTCGCAGCGCAACACAACCT
UFO02153.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED4-RA | 941 | CG8609-RA | 84..857 | 9..782 | 3870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7249613..7250149 | 782..246 | 2685 | 100 | Minus |
| 3L | 28110227 | 3L | 7250207..7250444 | 246..9 | 1190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:35:14 has no hits.
UFO02153.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:20:08 Download gff for
UFO02153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED4-RA | 72..853 | 1..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:38 Download gff for
UFO02153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED4-RA | 76..857 | 1..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:01 Download gff for
UFO02153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED4-RA | 76..857 | 1..782 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:01 Download gff for
UFO02153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7249613..7250149 | 246..782 | 100 | <- | Minus |
| 3L | 7250208..7250451 | 1..245 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:38 Download gff for
UFO02153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7242713..7243249 | 246..782 | 100 | <- | Minus |
| arm_3L | 7243308..7243551 | 1..245 | 98 | | Minus |
