UFO02158.5prime Sequence
1120 bp (1007 high quality bases) assembled on 2008-12-21
> UFO02158.5prime
CAGTCGACATGTTGCATCTGAGCAAACAACTGGTGGTCAGGGCGCCCAAG
ATCCGTCTGAATGCCAGCGCTGTGAGTGGAAGTGGTCAAAGTTCAAGTTT
CGATCAAAACAGCAACAATTACAGCCGAAAACTTGTTGGCCCTAATCTCA
ATCAATGCCACAAACGCTTGTCCAGCAGTAGTCAAAGTTCGACAGCCGGC
ACGATGAAGCGTTTGGCAGGAAAAGTAGCCGTGGTCACCGCCTCCACCGA
TGGCATTGGTTTCGCGATTGCCAAAAGGCTGGCCGAAGATGGCGCCGCAG
TGGTCATCAGCAGTCGCAAGCAAAAGAATGTGGACTCTGCTCTGGCGGAG
CTGCGCAAACTGAACTTGAATGTCCACGGTCTGAAGTGCCATGTCAGCGA
ACCCGAGGATCGCAAACAGCTCTTCGAGGAGACCATCAGCAAGTTTGGCA
AGCTTAACATTCTGGTCAGCAATGCAGCCACCAATCCTGCGGTCGGCGGT
GTCCTCGAGTGCGACGAGAAGGTGTGGGACAAGATCTTCGATGTGAACGT
GAAGAGTTCCTATCTGCTGGCCAAGGAGGCACTGCCTCTCCTGCGCCAGC
AAAAGAACTCCAGCATCGTTTTCGTCTCCTCCATTGCTGGCTATGATGCC
TTTGAGCTACTGGGAGCCTATTCCGTCAGCAAGACCGCGCTGATTGGCTT
GACCAAGGCAGCCGCCAAGGATCTGGCGCCCGAGGGCATTCGCGTCAACT
GCCTGGCTCCAGGAGTCATCACGACAAAGTTCTCGAAAGCACTGTACGAG
AATGAGTCGGCGAATGAAGCGGCTTTGAGCAAAATACCCATGGGTCGTCT
GGGCACCAGCGAGGAGATGGCTGGCGTGTCCCCTTTTTGGTCTCCGAGGA
TGCGGGCTACATTACCGGAGAGTCCATTGGTGGCGGGGCGGTGGATGACA
GCTCGTTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGTTA
GTGTCATATTCATATCATTATTCATAATCATAATCACACTAGCCTAGAGA
ATCCTGTCTGACTAGTGCTGATCTCAACAATAAAACGCCGGCGCCACGAA
GCGTCTGAACAAATCCAATG
UFO02158.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10672-RA | 1082 | CG10672-RA | 97..1052 | 9..964 | 4555 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5140840..5141243 | 656..253 | 1960 | 99 | Minus |
| 3L | 28110227 | 3L | 5140470..5140779 | 964..655 | 1305 | 96.1 | Minus |
| 3L | 28110227 | 3L | 5141306..5141550 | 253..9 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:16:23 has no hits.
UFO02158.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:20:16 Download gff for
UFO02158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10672-RA | 105..1066 | 9..970 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:09 Download gff for
UFO02158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10672-RA | 97..1058 | 9..970 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:28 Download gff for
UFO02158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10672-RA | 97..1058 | 9..970 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:28 Download gff for
UFO02158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5140464..5140777 | 657..970 | 96 | <- | Minus |
| 3L | 5140840..5141242 | 254..656 | 99 | <- | Minus |
| 3L | 5141306..5141550 | 9..253 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:09 Download gff for
UFO02158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5133564..5133877 | 657..970 | 96 | <- | Minus |
| arm_3L | 5133940..5134342 | 254..656 | 99 | <- | Minus |
| arm_3L | 5134406..5134650 | 9..253 | 100 | | Minus |
