UFO02162.5prime Sequence
1107 bp (1015 high quality bases) assembled on 2008-12-21
> UFO02162.5prime
CAGTCGACATGGCTAAAATCTTAATCAGTGCTCTATTGTGCGTTGCCATG
TTTGGCTCAATGGCTGCCGCCGCCGCCGGTGCATGCAAGGAGGCGAATGG
AACTGCTCCCGTGTCCGGATCCTGCGATGCCTACATTGAGTGCAAGAACG
GAGTGGCCGAGGAGAAGCTCTGCCCCGACGGTCTGCTGTACAACGAAAAG
TCCACGGGTTACCCCTGCGGCTATCCGATCGACGTGGAGTGCACCCAGGG
CCAGGCCCGCCTGCAGGCCGCTCAGCCAACGGATGAGTGCCCCCACCAGT
TCGGATACTATCGCATGGGTGATGCCAGCCATTGTGGACAGTTCATGAAC
TGCGCCGCGGGCCGTGGCTTCGTGTTCGACTGCCCCGAGGGTCTGGCCTG
GAATCCGGCCACCTACAAGTGCGATTGGCCCGATCAGGTGGAGGACTGTG
ACGCCGAGGCCTTCCTGGGCTTCCGCTGCCCAGCGCCGGCACCCAGATCT
GAGCTGCTCGGCGAGCAGGAGGCTGACTACACCTTCCACCCGTCGCAGGA
CAATTGCCAGGTGTACTTCATCTGTATCGAGGGACGTCCGCGTCGCATTG
GCTGCGGCGAGGACCAGGCTTTCAACCAGGAGCTGAACCAGTGCGACGAC
ATCGAGAACGTGCCCAACTGCAGCAGTGCCATCCGTGAAAAGGGTGCCCA
AATCAAGGCTGCTCGTCTTCACGCCAGGAAGAACGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGATTCTCACCAATAAAAACGCCCGGGCGGCACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGTCATTACTGGATCTATCAACAGGAGTCCAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCACTCATCGCAGTACTTGTTG
TATCATAGCATTCTGCGAACAAGGAGCATCACAAACGGCATGATGACTGA
ATCCGCAGCGCATCAGCACTGTCGCCTGCGTATATATTGGCCCATGTGAA
CGGGGCG
UFO02162.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| obst-E-RA | 994 | CG11142-RA | 128..853 | 9..734 | 3630 | 100 | Plus |
| obst-E-RB | 998 | CG11142-RB | 128..184 | 9..65 | 285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5763601..5764272 | 734..63 | 3360 | 100 | Minus |
| 2L | 23513712 | 2L | 5765961..5766015 | 63..9 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:15 has no hits.
UFO02162.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:45 Download gff for
UFO02162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| obst-E-RA | 127..856 | 9..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:29 Download gff for
UFO02162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| obst-E-RA | 128..857 | 9..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:22 Download gff for
UFO02162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| obst-E-RA | 128..857 | 9..739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:22 Download gff for
UFO02162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5763597..5764271 | 64..739 | 99 | <- | Minus |
| 2L | 5765961..5766015 | 9..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:29 Download gff for
UFO02162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5763597..5764271 | 64..739 | 99 | <- | Minus |
| arm_2L | 5765961..5766015 | 9..63 | 100 | | Minus |
