UFO02163.5prime Sequence
1147 bp (1026 high quality bases) assembled on 2008-12-21
> UFO02163.5prime
CAGTCGACATGAACCGCTGGTTGAATCGCGTTGCCGTAGTCACTGGTGCC
AGCGCCGGAATCGGAGCAGCCTGCTGCCGCGATCTGGTGGCCAAGGGAAT
GGTAGTGGTGGGCCTGGCCAGGAGAGAGAAGGTCCTCCAGGACATCAAAT
CCTCCCTGCCCGCCGATCAGGCTGCTCGCTTCCACACCCGCCCCTGTGAT
GTCAGCAATGAACAGCAGGTCATCGATACCTTCGCCTGGATCGATCGCAC
CCTGGGTGGTGCCGACGTGCTTGTCAATAACGCCGGGATCATACGTCAAA
TGAACATCACGGACCCGGAAAATTCCGCTGATGTGCGTGCCATTCTGGAC
GTGAATGTGTTGGGAGTGACCTGGTGCACCCGCCAGTGGTTCCTATCGCT
GCAGCGCCGCAAGGTAAACGACGGTCATGTGGTAGTCATCAATAGTGTGG
TAGGCCACTCCGTTCCGGCCGTGGAGGGCTTCAGCCTGAACATGTACGCG
CCCTCCAAACACGCGATCACCGCCTTGACCGAAATCCTGCGTCAGGAGTT
CATCAAGAAGGGCACTCAAACAAAGATCACGAGCATCAGTCCTGGTGTAG
TGGCCACTGAAATTTTCGAAGCCGGATCCTGGGAGCAACCCACAGGCATG
CCCATGCTGCGATCGGAGGATATAGCCGATGCGGTGACCTACTGCATCCA
GACGCCCCCAACTGTCCAGATAAAGGAGCTCATAATCAAGCCGGTTGGTG
AGGGCTTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGGCGAGCTCGATATCAAATTACGC
CCCGCCCTTGCCACTTCATCGCAGTACTTGTTTGTAATTTCAATTAGCAT
TCTGCGAACATGGAGCCATTCACAAACGCATGATGACCTGAATCGCAGCG
CACTCAGCACTGTTCGCTTGGCGTATATATTTGGCCATGTTGTACCG
UFO02163.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3301-RC | 814 | CG3301-RC | 38..788 | 8..758 | 3755 | 100 | Plus |
| CG3301-RB | 1101 | CG3301-RB | 38..788 | 8..758 | 3755 | 100 | Plus |
| CG3301-RA | 1006 | CG3301-RA | 38..788 | 8..758 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21275639..21276212 | 581..8 | 2870 | 100 | Minus |
| 3R | 32079331 | 3R | 21275404..21275581 | 758..581 | 890 | 100 | Minus |
| X | 23542271 | X | 11764207..11764466 | 283..24 | 265 | 73.5 | Minus |
| 3R | 32079331 | 3R | 5849343..5849434 | 651..742 | 190 | 80.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:53:40 has no hits.
UFO02163.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:44 Download gff for
UFO02163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3301-RB | 31..795 | 1..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:15 Download gff for
UFO02163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3301-RA | 29..793 | 1..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:56 Download gff for
UFO02163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3301-RA | 29..793 | 1..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:56 Download gff for
UFO02163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21275399..21275580 | 582..763 | 98 | <- | Minus |
| 3R | 21275639..21276217 | 1..581 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:15 Download gff for
UFO02163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17101121..17101302 | 582..763 | 98 | <- | Minus |
| arm_3R | 17101361..17101939 | 1..581 | 99 | | Minus |
