UFO02164.5prime Sequence
1112 bp (1019 high quality bases) assembled on 2008-12-21
> UFO02164.5prime
CAGTCGACATGTCGGATTCGCTGATCATTTGCGTTTCCGACTACTGGCGG
CGATGTCATTACCACAATCGTCAAAATCGTGAAGCCGGCGACGCCTGGCC
AGAAGCCAAACCGCTGCGGAGGCTGTGCATCGATGTGGACGCCATCAATG
GTAATTACTATCTTCGCGAGTTCCTGCACCAGCACGTGCTTGCCCAGAGC
CTTATGCACAATCATGGTGTCCAGCTGGTCTGGCTGCAATTCGAGGAACC
GGAGAAGCACACCATTGACTACAAATTCGCCGACATGCTGGCACACACGC
TGTGGGAGCGCATCGAGGTGGAGCACCTCATGTCCTGGCTGTCCACACTG
GGCGGCGGATTCTCCGCCCTTGGCGAGCAGTTCGAGCGATGTGCGAAAAC
GGCTGGCAAGATTTCGCTGCAGCAGTTAAAGATTGGCATGCGACTCGGTG
ATCCCTTCCTGCAGACGCGCTGCAAGCTCTACTACAGCATTTCGCTAATC
CAGCGTGGTCAACTACGGATGGCGAAGCATTTGATCCGACAGCAGTATAA
GTTTGCGAGTAGAAACATCGAGAAGGATGTGCGCCTGATGCGGATGTGTC
TGGGCATTTGGCGGCGACTTAGCTACGAGTACGAGCAGCGAAGACTGCGG
AAAGGTGGCAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCACAGGAGTCCAGCGAGCCTCGATATCAAATTACG
CCCCCGCCCTGCCACTCATCGCAGTACTGTTTGTAATTCATTAAGCATCT
GCCGACATGCAGCCATCCACAAACGGCATGATGAACCTGATCGCCAGCGC
ATCAGCACCTGTCGCCTTGCGTATATATTTGCCATGTGAAACGGGGCGAA
GAAGTGGTCAATTGCACGTTTATCAAACTGGTGAACTCACCAGATGCTGA
ACGAAACCATTT
UFO02164.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12123-RA | 1044 | CG12123-RA | 224..877 | 9..662 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8441741..8442125 | 393..9 | 1925 | 100 | Minus |
| X | 23542271 | X | 8441414..8441683 | 662..393 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:05:18 has no hits.
UFO02164.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:42 Download gff for
UFO02164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12123-RA | 215..876 | 5..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:36 Download gff for
UFO02164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12123-RA | 222..883 | 5..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:34 Download gff for
UFO02164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12123-RA | 222..883 | 5..670 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:34 Download gff for
UFO02164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8441408..8441683 | 393..670 | 98 | <- | Minus |
| X | 8441742..8442127 | 5..392 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:36 Download gff for
UFO02164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8335441..8335716 | 393..670 | 98 | <- | Minus |
| arm_X | 8335775..8336160 | 5..392 | 99 | | Minus |
