UFO02166.5prime Sequence
1105 bp (1023 high quality bases) assembled on 2008-12-21
> UFO02166.5prime
CAGTCGACATGCACCTGTCACACGGCCAACTGAAAGTGGTGCTCATTTTG
GCCCTGCTGCAGGAGCTGCAGGTGAAGCCGCAGCGAGAGGTGTTCCAGGA
ACTTTTCGAGAAGGATCTGCGCTTGTGTCCAGACTGTTTCGTTGGACAGA
GTGAGCCGTGCGGGGAAATCTTCCAGAAAATTGCAGAGCCCTCGGATTGG
AGTAGACTTGTGAAAGCCATTTCGTTGCTCGTTGATCGCCGAGCGATTTA
CTTTCTAAGGCTAAAAGACCGGGATCAGGAAGTCCAGCTGGTGGCCAAAA
GAAAAATCATTGATGCACAGAGTAATCAGATAAAAAATGTGAAAAAAGAT
TTCTATGAACTAGAGGAGCGACCTGGTGGTTTTCATCTCTGCCGAACTCT
GGCAAGGGAACCCCGCTTTGTTTCGTACTTGGAGCAGCGTGGACATGCTG
CCGCCAGTGTGTGGTTCTACATGATGTACTACGTTAGTCCGCTGCTTATG
CAGGAACTGCATCTGCAGGGATTTCCAGTGCCTACCACCTACGCCTCCTG
CGGACTAACACATTTTCAATCCAATGCAGGACGTACTTTAGCTCATTACG
TCGATGCTGAAGAAGGTTTGCGTGTGGAGCTGGCTCTCCAGTTGATCCAG
CTCTCCCTCAAGCTGACTTTTGGATTCGCGGACTTTCGCATTATCTTAAC
CGATTTCACGGCCGATAATTTGGCTTACGACGAAGACACCAAGAAAGGTG
TACCTCATTGATTTGGACTCCGTGGTCCTGGTGGACGCTTCGTTCGCAGC
AGGACATGCCGAAAAGTACGAGCCGCTGACCGGCGAGGGATTCACATTTG
ATGTCTCTGCATTCTGCTCCGGCCATCAGCTGGATGCCAATATCTACCAG
CGTGCCTTTTGCTAAGGATTACTTGCTTAGATTTGGACACGAAAGCTGCA
GCTGCTCTGAGCAGTGTGTAGCATGCAGATGACTTCTGTGATATGCGTTT
CAACATGCTACGACTTATAAAGTGCTGAAGCATAATGCAGCATCTAGACA
TCGTGGCCGCGGCCCAGGTAATGTCTAATCCTATCTATCTAATCTATCAC
TAGCT
UFO02166.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11170-RD | 1106 | CG11170-RD | 38..1069 | 9..1027 | 4785 | 98.5 | Plus |
| CG11170-RC | 1135 | CG11170-RC | 67..1098 | 9..1027 | 4785 | 98.5 | Plus |
| CG11170-RB | 1195 | CG11170-RB | 127..1158 | 9..1027 | 4785 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22177486..22178487 | 1001..9 | 4545 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:42:24 has no hits.
UFO02166.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:40 Download gff for
UFO02166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11170-RB | 75..1111 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:51 Download gff for
UFO02166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11170-RB | 122..1158 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:22 Download gff for
UFO02166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11170-RB | 122..1158 | 1..1027 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:22 Download gff for
UFO02166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22177486..22178492 | 1..1001 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:51 Download gff for
UFO02166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18064991..18065997 | 1..1001 | 98 | | Minus |
