UFO02168.5prime Sequence
1113 bp (1015 high quality bases) assembled on 2008-12-21
> UFO02168.5prime
CAGTCGACATGTCGCAGCCACTCAAGTTCTACTTCGATTTCCTGAACCAA
TCGAGCCGGGCGCTCTACATCCTCCTGGAGGCCTCCAAGATCCCCTTCGA
GGCCATACCCATATCGATGCTCAAAGGCGAGCACCTGACTGGCGAGTTCC
GGGACAATGTGAACCGGTTCCGCAAGCTGCCGGCGATCACGGATCACGGC
TACCAGCTGTCCGAGAATGTGGCCATCTTCCGGCATCTGGCACGCGAAAA
GTTGGTGCCGGAGCACTGGTATCCGCGACGACATCTCGGCCGTAGTCGCA
TCGATGAGTACCTGGCCTGGCAGCAGACCAACATGGGTGTGGCCACCACG
GAGTATTTCCAGCAAAAGTGGCTGGTGCCGTATCTGCAAAAGACCCGGCC
AGCCGATAATGCGGTGAATCTCGCCAGCAAGCAGCTGGAGCACACGCTCA
ACGAGTTCGAACAGCTATTCCTCAACTCCCGCAAGTTCATGATGGGCGAC
AACATTTCGTATGCGGATCTCAGCGCCATCTGCGAAATCGATCAGCCGAA
ATCCATTGGCTACAATGCGTTCCAGAATCGCAACAAGCTGGCGCGTTGGT
ATGAAACGGTGCGCGAGGAGCTGGGTCCCCACTACAAGGAGGTGCTGGGC
GAGTTCGAGGCCAAGCTGAAGGGCAGTGGCAGTGGTCAGCAGCAGGGCGT
CGCCCAGGCGGTGAAGCAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
AACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGTCATTACTGGATCTATCACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCGCCCTGCCACTCATCGCAGTACTGTGTATCATAGCATTCTG
CGACATGAAAGCCATCAAAACGCATGATGACTGATCGCCAGCGGCAATCA
ACACTTGTCGCCTGGTATAATATTGGCCATTGATGAACGGGGCAAGAGTG
TCATATTGCCCAG
UFO02168.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstT4-RA | 1220 | CG1681-RA | 215..929 | 5..719 | 3560 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13408286..13408576 | 125..415 | 1455 | 100 | Plus |
| X | 23542271 | X | 13408863..13409032 | 550..719 | 850 | 100 | Plus |
| X | 23542271 | X | 13408655..13408791 | 413..549 | 685 | 100 | Plus |
| X | 23542271 | X | 13404963..13405089 | 5..131 | 605 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:42:21 has no hits.
UFO02168.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:38 Download gff for
UFO02168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1681-RA | 205..927 | 1..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:49 Download gff for
UFO02168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstT4-RA | 212..934 | 1..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:19 Download gff for
UFO02168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstT4-RA | 212..934 | 1..726 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:19 Download gff for
UFO02168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13404960..13405084 | 1..126 | 97 | -> | Plus |
| X | 13408288..13408574 | 127..413 | 100 | -> | Plus |
| X | 13408656..13408791 | 414..549 | 100 | -> | Plus |
| X | 13408863..13409037 | 550..726 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:49 Download gff for
UFO02168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13298993..13299117 | 1..126 | 97 | -> | Plus |
| arm_X | 13302321..13302607 | 127..413 | 100 | -> | Plus |
| arm_X | 13302689..13302824 | 414..549 | 100 | -> | Plus |
| arm_X | 13302896..13303070 | 550..726 | 98 | == | Plus |
