UFO02173.5prime Sequence
1121 bp (1027 high quality bases) assembled on 2008-12-21
> UFO02173.5prime
CAGTCGACATGGAGGAGCTGGATATAACAAGCGTGGGTCAATTCCAGACC
CTGGTGCGCTACAACAACCCGGTGCTGGTGGTGAAGCACCCGGACAAGAA
AGGGGGTGCTCCGCTCACAGAGATAGAGATGAAAAGGCCCCAAACGGCGG
GCGCTTTGCTAGATACCAAAAGGGAAACTGAGGAAATTCTAAATTCTATA
TTGCCACCGCGCTGCTGGGAGGAGGATGGCCAGTTGTGGCAGCAGTCTGT
GTCCAGTACTCCAGCAACACGCCAGGATGTGATCAATTTGCAGGAGATGC
TTGATACTAGGCTGCAGCAGACCCAAGCTCGTGAGACAGGTATTTGTCCC
GTGCGCCGCGAGCTGTACTCACAATGTTTTGACGAGATCATTCGCCAGGT
CACCATTAACTGTTCAGAGCGTGGCCTGCTACTGCTTCGCATCCGCGATG
AGATCGCCATGTCAATGGAGGCCTATGAAACATTGTACTGCAGTTCCGTA
GCCTTTGGCATGCGCAAGGCTTTGCAGGCGCATGAGGAAAAGGAAATGCT
TCGTGATCGGGTCAAGACTCTTGAACTAGACAAAGAGGCACTAGAGGAGA
TAATCGCAGATATGAAACTTAAGCAGGAACAGGCAGAGCGTCGTAATGCT
GAGCTGAGGGCCTCTGAAGAAAAGAAGTTCACGGAGGAGATAACTTTCCT
GAAGAAGACCAACGCTCAGCTGAAGGCTCAGCTAGAGGGCATAACCGCAC
CCAAGAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCACAGAGTCCAAGCGAGCTCGATATCAAATACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATCATAGCATTCTTGCGACTGGAG
CATCCTACGCATGATGACTGATCGCCAGCGCATCAGACTGTTGCCTTGCG
TATAATTTGCAATGTGAAACG
UFO02173.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6971-RA | 939 | CG6971-RA | 97..846 | 9..758 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11892399..11892776 | 758..381 | 1890 | 100 | Minus |
| 3R | 32079331 | 3R | 11892829..11893201 | 381..9 | 1865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:45:07 has no hits.
UFO02173.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:32 Download gff for
UFO02173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6971-RA | 90..849 | 1..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:38 Download gff for
UFO02173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6971-RA | 90..849 | 1..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:49 Download gff for
UFO02173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6971-RA | 90..849 | 1..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:49 Download gff for
UFO02173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11892400..11892775 | 382..757 | 100 | <- | Minus |
| 3R | 11892829..11893208 | 1..381 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:38 Download gff for
UFO02173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7718122..7718497 | 382..757 | 100 | <- | Minus |
| arm_3R | 7718551..7718930 | 1..381 | 98 | | Minus |
