UFO02174.5prime Sequence
1115 bp (1017 high quality bases) assembled on 2008-12-21
> UFO02174.5prime
CAGTCGACATGATGAACAAGAAGCTCTCGCCAGAGGATGCATTTTATGAA
AATTTGACCCTCGGTCTGATAAGGACGCTATCCAATGTGCCAAGGGTATG
TAATGTGACGTTGGAGCGACGACAACCTCTGAATGCCTGCCAGTTGGTGA
ATTGGGAGCAGAGGCACTGCGTCTACCTCCCGGAAGATATGAAGAAGTTC
TACCTATCTTCTGATGGCTTTATCTTAAACTGGAGCTACCAATATGCTCC
CAACGATATTAGGCGCGTGGGTCACATTCACTTTCCGCACTTGCTGCAAG
TGACCCTTTTGCGGGAGAACATAGAAACCACATCGAGCCACTCCAGCAAT
TCGACGGCTGTGCCCAATAGCAACTCGGATGTTGTGGGAGCAGCCGGGAG
CTCTCAATCCCTTCCAGCACCTATTGCCACCGGAAAAGACAAGTGGGGCA
ATGCCACGCCTATTATAACGGCCAAATCGAAAATATTTGAGATCAACAAC
GTAAACGAGGTGGCCAAGGTGTGTATGCTGTACGAATCTACCAGTTCCAA
CAATCCCAAGTTCTATCTGCTAGAGCTGAGCACCCTGAGCTGGCAGTTTT
TGGCGGACACCTTTAGTGAATACCTTCGGATGGCCATCGCGCACTTGGGA
CTGCCGTACTGGGAGCTGTGCTTCTCCACCTGTGGCCTGCCCTCTTGGAC
AGAGCAGCTGTTTCTTTTGCTAGCACCTCATCTTCTCGAGGAGCACGAGC
CACGACGTGGACGAGTACTGAATCCCGCTTGCGAGCATCCGTACAATATC
ATTGATCCGAACATTTTTCGGGGTAAACCAAAAAGCGTGGCAAAAGCAAC
GGCTACCAGCACCAAACAAAATCATAAAGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATATC
ATAATCACACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTGATCTCAC
AATAAAAAACGCCCGCGGCAACGACGTCTGAACAAATCAGATGGAGTTCT
GAGTCATACTGATCTATCACAGGATCAAGCGAACTCGATACATACGCCCG
CCTGCACTCATCGGA
UFO02174.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6931-RA | 1075 | CG6931-RA | 48..917 | 9..878 | 4350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11991481..11991842 | 517..878 | 1810 | 100 | Plus |
| 3L | 28110227 | 3L | 11991142..11991417 | 250..525 | 1380 | 100 | Plus |
| 3L | 28110227 | 3L | 11990917..11991084 | 82..249 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 11990783..11990855 | 9..81 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:23:06 has no hits.
UFO02174.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:29 Download gff for
UFO02174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6931-RA | 40..909 | 9..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:33 Download gff for
UFO02174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6931-RA | 48..917 | 9..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:12 Download gff for
UFO02174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6931-RA | 48..917 | 9..878 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:12 Download gff for
UFO02174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11991483..11991842 | 519..878 | 100 | | Plus |
| 3L | 11990783..11990855 | 9..81 | 100 | -> | Plus |
| 3L | 11990917..11991084 | 82..249 | 100 | -> | Plus |
| 3L | 11991142..11991410 | 250..518 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:33 Download gff for
UFO02174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11983883..11983955 | 9..81 | 100 | -> | Plus |
| arm_3L | 11984017..11984184 | 82..249 | 100 | -> | Plus |
| arm_3L | 11984242..11984510 | 250..518 | 100 | -> | Plus |
| arm_3L | 11984583..11984942 | 519..878 | 100 | | Plus |
