UFO02177.5prime Sequence
1105 bp (999 high quality bases) assembled on 2008-12-21
> UFO02177.5prime
CAGTCGACATGAAATCTATGTTGGTCCACATAGTTCTAGTGATTTTCATA
ATCGCCGAATTCAGTACAGCTGAGACGGACCACGACAAGAACCGACGAGG
TGCCAACATGGGGCTCTATGCCTTCCCGCGCGTTGGTCGCAGCGATCCCA
GTCTGGCCAACAGTCTGCGCGACGGATTAGAGGCCGGAGTCCTCGACGGC
ATTTACGGAGATGCCTCCCAGGAGGATTACAATGAGGCTGATTTCCAAAA
GAAAGCCAGTGGTCTGGTGGCCTTCCCACGCGTTGGCCGCGGTGACGCCG
AGCTGAGGAAGTGGGCCCACCTTCTGGCTCTGCAACAGGTGCTGGACAAG
CGCACGGGACCCAGCGCCTCCTCGGGATTGTGGTTCGGTCCCCGGCTGGG
AAAGCGCAGTGTGGACGCCAAGTCGTTTGCGGACATCTCCAAGGGACAGA
AGGAACTCAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGG
CATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAACGGG
GGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAAC
TCACCCAGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAG
GGAATAGCAGGTTTCACCGTACACGCCACATCTGCGATATATGTGTAGAA
CTGCGAATCGTCGTGTATTCCCTCCAGAGCGATGAAACGTTTCAGTTTGC
TCATGAACCGTTAACAAGGTGAAACTATCGATATCACAGTTCACGGTCTT
CATTG
UFO02177.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Capa-RA | 695 | CG15520-RA | 90..542 | 9..461 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29913144..29913371 | 461..234 | 1140 | 100 | Minus |
| 3R | 32079331 | 3R | 29913441..29913603 | 234..72 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 29914194..29914257 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:43 has no hits.
UFO02177.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:25 Download gff for
UFO02177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| capa-RA | 72..524 | 9..461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:47 Download gff for
UFO02177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| capa-RA | 90..542 | 9..461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:16 Download gff for
UFO02177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Capa-RA | 90..542 | 9..461 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:16 Download gff for
UFO02177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29913144..29913370 | 235..461 | 100 | <- | Minus |
| 3R | 29913441..29913602 | 73..234 | 100 | <- | Minus |
| 3R | 29914194..29914257 | 9..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:47 Download gff for
UFO02177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25738866..25739092 | 235..461 | 100 | <- | Minus |
| arm_3R | 25739163..25739324 | 73..234 | 100 | <- | Minus |
| arm_3R | 25739916..25739979 | 9..72 | 100 | | Minus |
