UFO02179.5prime Sequence
1083 bp (967 high quality bases) assembled on 2008-12-21
> UFO02179.5prime
CAGTCGACATGGGAGACAGTTCAGATGAGGAATATCTGGGCACGGACTGG
CTGGCTTACAGCGAACGCTCCGACTGGGAAGATGTGCAACCGCTCGCCCA
GGACGACGGTCCCAATCCGGTGGTGTCCATTGCTTACAGTCAAAAGTTTC
GCGAGGTCTTCGACTACATGAGGGCCATAATTGCGCGGGGGGAGAAGAGC
CAACGTGCCTTGGACCTAACCACGGACGCACTGCGTCTGAATCCGGCTAA
CTACACGGTCTGGCAATACAGACGCGACGTTCTGCGCGAACTAAAGGCTG
ATCTGTATGCGGAACTGGACTATCTGACCGAGGTGATTGGCCAGAACTCG
AAAAACTACCAGGTTTGGCACCACCGTCGCGTCATCGTCGAGATGCTGAA
CGATCCCAGCAACGAGCTGGAGCTTACTGAGAACGCCCTGGTCAACGATG
GCGATGCCAAGAACTACCACGCCTGGCAACATCGCCAGTGGGCCATTCGC
AGCTTTAATCTCTATGACGATGAACTTAGCTTTGTGGATCGTCTCATTAG
CGAGGATCAGCGCAACAATTCGGCCTGGAACCAGCGCTTCTTTGTGATCA
AGCATTTTGGATTCACGCCGGAGCTGATCCAGCGCGAACTGTCGTACACG
ATGAATCGCATTCGCATCATCAAAAACAACGAGAGTGCCTGGAACTATTT
GGTGGGCGTGATGCGGCAGGGCGACAGTGGAAATGCCCTGCTGAGCAGCT
ACCCGGATGTCGTGGACTTTGTGGAGGAGCTCTACCAGGCTGGCAATCGA
TCGCCCTACCTGCTGGCCTTCCTCATCGATCTCTACCAGGAGCAGCGCTC
CAACTAAAGGCCAGCGATAGCGATCAACTCGCCCGCAAGGTGTACGGTCT
GTGCGAGGACATGGCCACCAAACACGATGTGATTCGTCGCAAGTACTGCA
GTATGTGGCCACATCTGAGATCAGCTAGCACGTCGAACAGAACGCAGCTT
TCTAGACATTCGTTTGGCGCCCGCCCAGGTAGTGTCATAATCATATCATA
TTCATAATCTTATCCAACTAGTCTAGGGAATCT
UFO02179.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fnta-RB | 1352 | CG2976-RB | 87..1078 | 9..992 | 4755 | 99.1 | Plus |
| Fnta-RA | 1185 | CG2976-RA | 87..1078 | 9..992 | 4755 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4829525..4829984 | 961..504 | 2185 | 99.3 | Minus |
| 2L | 23513712 | 2L | 4830040..4830400 | 508..148 | 1805 | 100 | Minus |
| 2L | 23513712 | 2L | 4830469..4830607 | 147..9 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:01:25 has no hits.
UFO02179.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:23 Download gff for
UFO02179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2976-RA | 59..1038 | 1..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:28 Download gff for
UFO02179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2976-RA | 82..1061 | 1..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:11 Download gff for
UFO02179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fnta-RA | 82..1061 | 1..977 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:11 Download gff for
UFO02179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4829505..4829979 | 509..977 | 98 | <- | Minus |
| 2L | 4830040..4830400 | 148..508 | 100 | <- | Minus |
| 2L | 4830469..4830611 | 1..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:28 Download gff for
UFO02179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4829505..4829979 | 509..977 | 98 | <- | Minus |
| arm_2L | 4830040..4830400 | 148..508 | 100 | <- | Minus |
| arm_2L | 4830469..4830611 | 1..147 | 97 | | Minus |
