UFO02181.5prime Sequence
1121 bp (989 high quality bases) assembled on 2008-12-21
> UFO02181.5prime
CAGTCGACATGGCTGCAACTGCTCCGGTAATTATGCGCGTCATGGCGTCC
TCGATCAGCACCGCCAAGCGGGCTGGCGGCATCATACGCGACGTGCTCAA
GAAGGGTGACCTGGGCATAGTGGACAAGGGCAAGAACGATCCGCAGACGG
AGGCAGATCGCTCTGCCCAGCGTTGCATTATCGCCTCCTTGGCCAAAAAG
TTCCCCACCGTCAAGATCATTGGCGAGGAGGGTGGATCCGATCTGAATGT
CTGCGACGACTGGCTGGTGAACGAGTTGGATGAGGAATTCCTGCAGCACA
GTTGCCCCGCTGAGTGGAAGGATGTCAAGCCCGAGGACTTTGTCATATGG
GTAGATCCCCTAGACGGCACAGCGGAGTATACACAGGGACACGTTGAACA
CGTGACCGTCCTGATCGGCATAGCCGTGAAGGATGCTGCTGTGGGCGGCA
TCATTCATCAGCCATTCTACCAACAGCCCGATGGCGAAATGGGTCGCACC
ATTTGGGGCCTGAAGGGTCTGGGCACGGGAGGATTCACGGCAGTCCCCGC
GCCAGCCGGCCAGTTCATCATAACCACCACTCGCTCGCATTCCAATGCCC
TGCATCAGCAAGCCCTCAACGCATTCGCATCCACAGAAGTTCTGAAAGTC
GGAGGCGCTGGGTTCAAAGTGCTCCAGCTGCTGGAGGGAAAGGCCCACGC
GTACGTCTTCGCCACGCCGGGCTGCAAGAAGTGGGACACCTGCGCACCCG
AGGCCGTTCTAGAGGCCCAGGGCGGCTGCCTCACCAACATCAACGGCGAG
CACTACGCCTACAATGCGGATGTGGAGCACGTGAATCGACAGGGAGTGCT
GGCCAGCCTGGGACAGGACCATGCCGCGCTGGTGGAAAAGATTCCCGCCG
AGTGCGGGCAGCAGTGGAGCCAGGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAGTGGTCATATCATAATCATATCATATCATATCACA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTGATTCTCACCATAAAAA
CGGCCGGGCGCACGAGCGTTCTGACAATTCAGAATGGGGTTGAAGTCATA
CTGATCTATCACAGGAGTCCA
UFO02181.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7789-RA | 1130 | CG7789-RA | 107..1022 | 9..922 | 4530 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29803744..29804275 | 387..917 | 2610 | 99.8 | Plus |
| 3R | 32079331 | 3R | 29803302..29803681 | 9..388 | 1900 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:22:59 has no hits.
UFO02181.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:22 Download gff for
UFO02181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7789-RA | 106..1023 | 9..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:28 Download gff for
UFO02181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7789-RA | 107..1024 | 9..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:08 Download gff for
UFO02181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7789-RA | 107..1024 | 9..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:08 Download gff for
UFO02181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29803302..29803680 | 9..387 | 100 | -> | Plus |
| 3R | 29803745..29804275 | 388..917 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:28 Download gff for
UFO02181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25629024..25629402 | 9..387 | 100 | -> | Plus |
| arm_3R | 25629467..25629997 | 388..917 | 99 | == | Plus |
