UFO02182.5prime Sequence
1136 bp (1033 high quality bases) assembled on 2008-12-21
> UFO02182.5prime
CAGTCGACATGAGTACTATTGGCACTGGATACGACTTGTCGGCCTCGCAG
TTTTCGCCTGATGGCCGCGTTTTCCAGATCGACTACGCCTCAAAGGCGGT
GGAGAAGAGCGGCACCGTAATCGGGATTCGGGGCAAGGACGCCGTGGTGC
TGGCCGTGGAGAAGATCATCACCAGTAAACTGTACGAACCAGACGCCGGC
GGACGCATCTTCACCATCGAAAAGAACATCGGAATGGCGGTGGCCGGCTT
GGTGGCCGATGGAAACTTTGTGGCTGACATTGCGCGTCAGGAGGCAGCCA
ACTACAGACAGCAATTTGAGCAGGCTATCCCGCTTAAACACCTGTGCCAC
CGAGTCGCCGGCTACGTTCACGCCTACACTCTGTACAGTGCCGTCCGCCC
CTTCGGACTTTCCATCATTCTCGCCTCCTGGGACGAAGTAGAGGGGCCAC
AGCTCTACAAGATCGAGCCGTCCGGCTCCTCCTTCGGTTACTTCGCCTGC
GCCAGCGGCAAGGCCAAGCAGCTGGCCAAGACTGAGATGGAGAAGCTCAA
GATGGATATGAGGACCGACGAATTGGTGGAGAGCGCTGGTGAAATCATCT
ACAAAGTCCATGACGAGTTGAAGGACAAGGACTTCCGCTTCGAAATGGGT
TTGGTGGGCAGGGTAACCGGTGGCCTACATCTCATAAATCCCTCAGAACT
GACGGAGAAGGCGAGGAAAGCCGGCGATGCGGCCAACAAGGACGAAGACA
GCGACAATGAGACGCACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGGAGCGGTTCTGAACAAATCAAGATGGGAG
TTCTGAGGTCATTACTGGGATCTTATCAACAGGAGTCCAAGGCGAGCTCG
ATATCAAATTACGGCCCCGGCCCTGCCACTCATCGCAGGTACTGTTGTAA
TCATTAAGGCATTCTGGCCGACATGGAAGCCATCACAACCGGCAATGGAT
TGAACCTGATCGCGCAGGCGGCATCCAGCACTTGTG
UFO02182.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha7-RA | 976 | CG1519-RA | 120..878 | 9..767 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9847073..9847638 | 595..30 | 2830 | 100 | Minus |
| 2R | 25286936 | 2R | 9846734..9846905 | 767..596 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:39:41 has no hits.
UFO02182.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:36 Download gff for
UFO02182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha7-RA | 111..881 | 1..775 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:01 Download gff for
UFO02182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha7-RA | 113..883 | 1..775 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:02 Download gff for
UFO02182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha7-RA | 113..883 | 1..775 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:02 Download gff for
UFO02182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9846729..9846905 | 596..775 | 97 | <- | Minus |
| 2R | 9847073..9847638 | 30..595 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:01 Download gff for
UFO02182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5734234..5734410 | 596..775 | 97 | <- | Minus |
| arm_2R | 5734578..5735143 | 30..595 | 100 | <- | Minus |
