UFO02184.5prime Sequence
1106 bp (1010 high quality bases) assembled on 2008-12-21
> UFO02184.5prime
CAGTCGACATGAAGCGGAAAACGAGCGAGATCTGGTGCTTTTTCCGGGCG
GTGGACGACACGTTTGCGGTGTGTAATATCTGCAAGGCGAAGCTCTCTTA
CAAGACGACCACCACGAATCTAAGCAAGCACATGAACAGGATGCACCCCA
CATCGGGACTCAACCGGAACTCCAAGTACAAATTCCAGCCGCAGACCACC
ATCGCCATCGACCGGAACAAAGCCAAGCCGCGCAACTCAACGCAAGAGCT
GATATTGTTAGAATTCGTGAAGAAACATCCGCGTCTGCTTCAGAATCCGA
CGTGGGAAACACGGGGCAATCTGGAGTCGCTGTGGGAGGAACTGTCATCC
GAACTTAATAGCCACGGTCCGCCGCGAAAAGATATAGCCACCTGGAGAAG
GGCCTTAAAGGACTGGAAGAGGTTTATCCTGAGAAAGGTGGAAAAGAATG
AGATGCAGAACATGCCTTTTGGCACCAGTCTTACTTCGTCGGAGGAAACA
ATAGCCACACTGTGTAGATTAAACGAGGATGTAAGTCAGATTATTATGAA
GGTCTCCGACGATGAAATGCATGAGAATTCCACCACGGAATTTGATGTGG
ACGAAGTAGAGGATGTGGTCCCGGAAGAAGATGGTGGCGCCCTTCAGACT
TCCGCCGAGTACGTTTACGAACCGGAGGAGAACAAAACGGACATTGACCC
GCTTTACCTGCAATCTAACAAACGGGCCGCATTGGCCAGCAGTCGACTGG
CGGAGGAGGAGACCACACTGCTTGACAAGATTAGCAATAACCTAGAAATG
GTGCACGATACCGCCAACAGCGTTCAACTTGCACTCAATGAATTTTTTGT
CCTGTACAAGCAGAGCTGTACGAGGACAAGCGACATCACTTGGCAATTGA
ACAGTTAATGGCTGAAAAAATAGAACTGAAAAAGAAACTATTGAAATCGA
GCAAAAAAGCTGTCGCTCAAAGCAAGCCTTTCTAGAACATCGTTTGGCGC
GCGGGCCCAAGTAAGTGCTCATATCATAATCATATCATAATCATATCACA
ACTAGCTAAGGAATCTGTCATGACTGTGCCTGGATTCCCACAATTAAAAC
GCCCGG
UFO02184.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3995-RA | 1185 | CG3995-RA | 68..1040 | 2..971 | 4760 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17042041..17042614 | 971..401 | 2705 | 99.3 | Minus |
| 3R | 32079331 | 3R | 17042669..17043069 | 402..2 | 1990 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:35:50 has no hits.
UFO02184.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:34 Download gff for
UFO02184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3995-RA | 35..1011 | 1..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:05 Download gff for
UFO02184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3995-RA | 67..1043 | 1..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:21 Download gff for
UFO02184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3995-RA | 67..1043 | 1..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:21 Download gff for
UFO02184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17042041..17042613 | 402..971 | 99 | <- | Minus |
| 3R | 17042670..17043069 | 1..401 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:05 Download gff for
UFO02184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12867763..12868335 | 402..971 | 99 | <- | Minus |
| arm_3R | 12868392..12868791 | 1..401 | 99 | | Minus |
