UFO02187.5prime Sequence
876 bp (778 high quality bases) assembled on 2008-12-21
> UFO02187.5prime
CAGTCGACATGCGCAACTTCGTGATCATATTTAGCCTATCTCTGGCATTT
GGCATCGCCTCCGCCACCGATTATTGCAAAAAGAGCTGCGGAAGCACCAA
GAATCTGGGATGCGACAATAATGGAGCCTGGGCCTCAAGCTGTCCCAGTG
ACGCCACCCTGTTGACCCTCTCCAGCGCTGAGAAGGATGCACTGGTGGCC
AGGACGAACGAGTATCGCAACCACATCGCCGGCGGACTGAATGCCAATCT
GAGTGCCGCCTGTCGAATGGCCACGATCAAGTGGAACGATGAACTGGCTT
ACTTGGCCAGTTTGAACGTGAAAAGTTGTCAAATGAAACACGACGGCTGC
CACAATACGGATGCTTTCGACTGGTCTGGCCAGAATCTGGCCTGGATGGG
CTACTACAATCCGCTAAATGTTACACACTATCTAGAATGGGGCGTCGATA
TGTGGTACGATGAGGCGGTGTACACCAAACAGGCCTACATCGATGCCTAT
CCGTCGAACTACAATGGTCCGGCCATTGGACATTTCACGGTGCTCGTTGC
CGATCGGAATACGGAAGTGGGTTGTGCCGCGGCCACGTACTCCGTGTCCG
GCCAATCGTACAAGGCCTTCCTGCTGGCCTGTAACTATGCGGCCACCAAT
GTTCTGGGCATCAAGATGTACAGTTCCTGCTCCAAGGCGGGCAGCAAGTG
TACCACGGTACCAATCCCAAGTACAGTATCTGTGCAGCGCAAGGAGGAGT
ACAACGTAAACAACTCTCTATGCAAGCTTTCTAGACCATTCGTTGACGCG
CGGCCCAGTAGTGTCCTATTCTTATCCTAATCTGATCTATCCCACTAGCT
TAGGATCTGGTCTTGACTTGCTTGAT
UFO02187.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ag5r-RC | 1760 | CG9538-RC | 342..1100 | 9..764 | 3705 | 99.5 | Plus |
| Ag5r-RB | 1446 | CG9538-RB | 28..786 | 9..764 | 3705 | 99.5 | Plus |
| Ag5r-RA | 1011 | CG9538-RA | 28..786 | 9..764 | 3705 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14785324..14785965 | 764..126 | 3045 | 99.4 | Minus |
| X | 23542271 | X | 14786093..14786210 | 126..9 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:58:11 has no hits.
UFO02187.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:20:03 Download gff for
UFO02187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r-RA | 16..786 | 1..769 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:15 Download gff for
UFO02187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r-RA | 20..790 | 1..769 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:16 Download gff for
UFO02187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r-RA | 20..790 | 1..769 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:16 Download gff for
UFO02187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14785312..14785965 | 126..774 | 98 | <- | Minus |
| X | 14786094..14786216 | 1..125 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:15 Download gff for
UFO02187.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14679345..14679998 | 126..774 | 98 | <- | Minus |
| arm_X | 14680127..14680249 | 1..125 | 96 | | Minus |
