UFO02188.5prime Sequence
1115 bp (1023 high quality bases) assembled on 2008-12-21
> UFO02188.5prime
CAGTCGACATGAACCACTGGCTAAGTATCATTCTTCTTGGGGTGTGGATA
TCCGCTCCTGAAGGTCTGGGTAACACGATCAAGGATCGCAATCTCTTCGC
CACCGAACTCTTCCAAACCCTCGCCACAGATCGCCAGGATGAGAACGTGA
TCATCTCGCCGGTTTCCATCCAGCTGGCCCTCGGGTTGGCTTACTACGGA
GCTGAGGGCAGGACGGCCGCGGAACTGCAGAAGACCTTGCACGCCTCCGC
CAAGGAGAGCAAAGATGGTCTGGCCGAGAGCTACCACAACCTGCTGCACT
CTTACATCAAGTCCAAGACCGTGTTGGAGATCGCCAACAAGGTGTACACC
CGGCAGAATCTCACGGTATCTAGCCACTTCCGAGAGGTGGCCCAGAAGTA
CTTCGACTCCGAGGTAGAACCACTGGACTTCAGTCGCGAAACGGAGGCCG
TGGAGCAGATCAACCGCTGGGTGAAGCAGCAGACGGAGAACAAGATCGAA
CGGGTGGTGGAAAGCCTGGAGCCGGACACCAATGTGGCGCTGGTCAACGC
CATCTACTTCAAGGCTCGCTGGGCACGACCCTTCAACGACGAGGATACCC
GGGATCGCGAGTTCTGGCTGAGCGAGAGCCGGTCCATCCAGGTGCCAACC
ATGTTCGCAGACAACTGGTACTACTACGCCGACTACCCGGAACTCGACGC
CAAGGCCATTGAGCTGTTCTTCGAAAACATCAACCTGACCATGTGGTTCA
TCCTGCCCAACCAGCGTTCCGGACTACAGGCTCTGGAGCAGAAGCTCAAA
GGCGTCGACTTCAATCTGCTCGAAGACCGCTGGCAGTGGCAGAGTGTGTC
CGTTTACCTGCCCAAAGTTCAAGTTCGAGTTCGACACGGACCTAAGACCC
ACATTGCATAAGATGGGAAATCAGTGCCATGTTCTCAGATGCAGCCGACT
TCAGCAACATTTTCCAGACTCGCCCATCGGCACTCGATCACAAAGTGCAG
CACAAGAACCTTCATCGATGTGAACGAAATCGATGTGAGGCGCTGGAGCT
AGTATGCTGCCGGAGTCCATGTCTGCCTTGAACCCAAGACCTCTGCCGAT
TATTCATTTGCGCTC
UFO02188.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn43Aa-RA | 1294 | CG12172-RA | 37..1106 | 9..1073 | 5070 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7147811..7148694 | 28..912 | 4360 | 99.8 | Plus |
| 2R | 25286936 | 2R | 7148880..7149018 | 919..1053 | 385 | 95 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:42:00 has no hits.
UFO02188.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:20:01 Download gff for
UFO02188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Aa-RA | 23..1103 | 1..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:34 Download gff for
UFO02188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Aa-RA | 29..1109 | 1..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:07 Download gff for
UFO02188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn43Aa-RA | 29..1109 | 1..1078 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:07 Download gff for
UFO02188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7147811..7148694 | 28..912 | 99 | -> | Plus |
| 2R | 7148875..7149019 | 913..1053 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:34 Download gff for
UFO02188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3035316..3036199 | 28..912 | 99 | -> | Plus |
| arm_2R | 3036380..3036524 | 913..1053 | 93 | -> | Plus |
