UFO02189.5prime Sequence
1082 bp (974 high quality bases) assembled on 2008-12-21
> UFO02189.5prime
CAGTCGACATGTTTCGAGTGCATTGCAACAAGTGTTTCCGTCATCGCAAA
ACTGATCCAGCCGTGCCCTTCCACTTGACCCAGTGCCGGCACGTGATCTG
CGGCCCCTGTTTGGGCCAATCCTCGCTAGAAAAGAACTGCCCGCTATGCG
GCCAGGTGCTCAAAGCGATCCAGATCAACCGGGATATGCCAACTAGCGTG
GCCAACTACTTCGCGGATCCCCTGCGATTCCAGCAGATCTACCGCAAGAT
CTCCAAGTTCCAAGCGGACCAGCGAGCATCGGACAACCTGGGTTTCTACC
GTCAGTTGCAGCAGCTGGAGCAAAACAAGCGCCAGCTGGAGGGCTTTTGC
AAGATGGAGGCGCAGCTGAACCAGAAGGTCGTGGAGGAAAAGAAGCGAAT
CGCTGAATTGCGCACCTACATCGCTTACCACGAGAATGCGCAGAGGATGA
CGAGGCGCCGGCACAGTGCAGGTGAGAGATTCCATACGCCGGAGTTCAAG
GAGGCCTGGAACACCTCTATCAGCACTTCGGACAAATCGCCGTCGGATAT
GCCTTCTGATAGCTCCCGCCGGTCCGCGGACTTGGATACCCAGTCAACGC
GGAGAAGATCTTTTGGCAGCGACACTAAAGGCTTTCGTCTTGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCACAGG
AGTCCAAGCGAGCTCGATATCAAATTACGCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAGCATTCTGCCGACATGGAAGCCATCACAACG
CATGATGACTGATCGCAGCGCATCAGCACCTGTCGCTTGCGTATATATTT
GCCATGGTGAACGGGGCGAGAGTGGTCATATGCAAGTTATCAAACTGTGA
CTCACCCAGATGGCCTGAACGAAACCATTCTC
UFO02189.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12200-RA | 993 | CG12200-RA | 105..737 | 9..641 | 3165 | 100 | Plus |
| CG31053-RA | 818 | CG31053-RA | 19..431 | 9..421 | 535 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19475167..19475799 | 9..641 | 3165 | 100 | Plus |
| 3R | 32079331 | 3R | 27927744..27928156 | 421..9 | 535 | 75.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:37:42 has no hits.
UFO02189.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:20:00 Download gff for
UFO02189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12200-RA | 33..673 | 1..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:02 Download gff for
UFO02189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12200-RA | 97..737 | 1..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:38 Download gff for
UFO02189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12200-RA | 97..737 | 1..641 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:38 Download gff for
UFO02189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19475159..19475799 | 1..641 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:02 Download gff for
UFO02189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19369192..19369832 | 1..641 | 99 | == | Plus |
