UFO02190.5prime Sequence
1089 bp (999 high quality bases) assembled on 2008-12-21
> UFO02190.5prime
CAGTCGACATGCGCGGCGCCCTAATGGATTACTATCTAAAAATACTCTTG
GTTATTTGCGCTGCCCACGAATTGGCCGGCGGAACGATCAAGTCTACCAG
AGATGCTGTTTACAAAAAATATCTGTCCCTAAGATCTTTGCCCTTCGAGG
ATTGCGGTTCTTTGTACCAGGTCAGCTACCTGGACATCGAGAGCTGTACG
ACACTGCCCTGCTCCATGGCCCGGAACGCGACAATTAAGGTTACTGTGCG
CTTCGATGATAATGGCAATGGCGTCAGCTTTCTGAAGCACGAAGTCCGAT
GGGTGTTTAACTACATCAAGACCCAGGCGGCCATAACTCCCGATCCCTGC
GACGGAGATCACGGATGCATAGAGAGCGCAAGTGGTGGAAAGGCCTATTG
GGCCAATATCTTTGTGAACGAAACTTTGCCGGTGATGAAAGGTAGCATGT
TGTGGGAATCCAAGGATGCGAACGATCAGAACCTAATCTGTTTCCAGGTT
CCCGTTGTAATCACAGTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGATCGC
CAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAA
ACGGGGGCGAAGAGTGTCCATATTGCCACGTTTAAATCAAACTGTGAAAC
TCACCAGGGATGCTGAGACGAAAACATATCTCATAACCCTTAGGAATAGC
AGCTTCACGTACACGCCCAATCTGCCATATGGTGTAGAACTGCGATCGTC
TGCATTCACTCGAGCATGACGTCAGTTGCTATGGAAACG
UFO02190.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2f-RA | 712 | CG6164-RA | 158..668 | 8..518 | 2555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24140526..24140696 | 264..434 | 855 | 100 | Plus |
3R | 32079331 | 3R | 24138052..24138202 | 8..158 | 755 | 100 | Plus |
3R | 32079331 | 3R | 24139778..24139887 | 156..265 | 550 | 100 | Plus |
3R | 32079331 | 3R | 24140808..24140892 | 434..518 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:20:45 has no hits.
UFO02190.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:19:59 Download gff for
UFO02190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6164-RA | 158..671 | 8..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:13 Download gff for
UFO02190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2f-RA | 158..671 | 8..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:10 Download gff for
UFO02190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2f-RA | 158..671 | 8..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:10 Download gff for
UFO02190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24138052..24138200 | 8..156 | 100 | -> | Plus |
3R | 24139779..24139886 | 157..264 | 100 | -> | Plus |
3R | 24140527..24140696 | 265..434 | 100 | -> | Plus |
3R | 24140809..24140892 | 435..518 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:13 Download gff for
UFO02190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19966249..19966418 | 265..434 | 100 | -> | Plus |
arm_3R | 19966531..19966614 | 435..518 | 100 | == | Plus |
arm_3R | 19965501..19965608 | 157..264 | 100 | -> | Plus |
arm_3R | 19963774..19963922 | 8..156 | 100 | -> | Plus |