UFO02195.5prime Sequence
886 bp (46 high quality bases) assembled on 2008-12-21
> UFO02195.5prime
CAATCCACATGCATTCTCACATTTAAAAGGGCGTTTGTTACTACTACGAC
AGCGACTTTGGCAACTACTACTATGGCCAGGGTCATCCCATGACGCCCCA
TCGCATACGCATGACCCACAACCTGCTGCTCAACTATGGGCTCTATCGAA
AAATGGAAATATACCGTCCCCATAAAGCCACTGCCGATGAGATGACCAAG
TTCCACTCGGACGAGTACGTCCGGTTCTTGCGATCCATTCGGCCGGACAA
CATGTCGGAGTACAACAAGCAGATGCAGCGATTCAGTGTCGGCGAAAATT
GTCCCGTCTTCGATGGACTATTCGAGTTTTGCCAACTCTCCGCCGGAGGA
TCCGTAGCTGCGGCCGTAAAACTGAATAATCAAGCCTCGGAGATTTGCAT
CAGTTGGGGCGGTGGGCTGCATCACGCCAGAGAATCGGAGGCCTCGGGCT
TCTGCTACGTCAACGACATTGTTCTGGGAATTCTGGAACTGCTTAAATAC
CATCAGCGTGTTCTCTACATAGATATAGACGTCCATCACGGCGATGGCGT
GGAGGAGGCGTTCTATACCACCGATCGTGTGATGACTGTCAGCTTCCACA
AGTACGGAGAGTATTTCCCGGGCACCGGCGATCTGCGAGACATTGGCGCC
AGCAAGGGACAGTATTATGCGGCTAATATACCCCTGCGCGATGGCATGGA
TGATGATGCGTACGAGAGCATATTTGTGCCCATTATCAGCAGGTGATGGA
AACATTCCAGCCGGCAGCCGTGGTGCTGCAGTGAGGCGCCGATTGGCTGA
CTGACGATCGGTTACGTCGCTTTGATCTCGACGTCTAAGAGTCATGGCAA
ATGCGTGGAGTACGTGATTAAATGATAATCTAGCCA
UFO02195.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpd3-RA | 2124 | CG7471-RA | 207..1065 | 9..867 | 3665 | 95.2 | Plus |
| Hdac3-RA | 1660 | CG2128-RA | 689..880 | 417..608 | 270 | 77.3 | Plus |
| CG45100-RA | 1660 | CG45100-RA | 689..880 | 417..608 | 270 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4627611..4628313 | 165..867 | 2940 | 95.2 | Plus |
| 3L | 28110227 | 3L | 4627420..4627532 | 52..164 | 535 | 98.2 | Plus |
| 3R | 32079331 | 3R | 5473590..5473748 | 608..450 | 255 | 77.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:40 has no hits.
UFO02195.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:21:19 Download gff for
UFO02195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpd3-RA | 224..1045 | 9..829 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:45 Download gff for
UFO02195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpd3-RA | 207..1028 | 9..829 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:14 Download gff for
UFO02195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpd3-RA | 207..1028 | 9..829 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:14 Download gff for
UFO02195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4627420..4627532 | 52..164 | 98 | -> | Plus |
| 3L | 4627611..4628276 | 165..829 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:45 Download gff for
UFO02195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4627420..4627532 | 52..164 | 98 | -> | Plus |
| arm_3L | 4627611..4628276 | 165..829 | 95 | | Plus |
