UFO02202.5prime Sequence
1114 bp (1039 high quality bases) assembled on 2008-12-21
> UFO02202.5prime
CAGTCGACATGGAAGAACGCAAGCTGCTCCGCGCGGTGAAATCAACTAAT
CCACTGGTCTACCTGGACATTTCCATTGGCAAGGAGGATGCGGGTCGAAT
GATAATTGAACTGCGCAAGGATGTTGTGCCGAAGACAGCGGAAAATTTCC
GTGCCCTGTGCACGGGCGAATGTGGTATCGGTACTCTGGGCAAACCGCTC
CACTACAAGGGCACAAAGTTCCACAAGATCAAGCGAGTCTTCGTCGTCCA
GAGTGGGGATGTGGTGAAGAACGATGGAAGCAGCGGCGAGAGCATCTACG
GACCAGTTTTCGATGACGAGAACTTCGAACTCTCACACAACGAAGAGGGC
GTGGTCAGCATGGCCAACTACGGCAAGCCAAACTCCAACAACTCGCAGTT
TTTCATTTCCGCCGCGGGCTGTGAAAATCTGAATGGAACAAACGTAGTCG
TAGGTCGTGTTTTACGCGGCCTGGGTATCGTAGCTGAAATGGAACAAAAC
TGCACTGACGAGGGCGATCCCACGGCGCCGATCGTGATACGGGACTGCGG
AGAGATAGCTCACAACGAGGACTGGGGCATCGAGTGCAACGACGAGACGA
CGGACAAGTTGCCTGCCTATCCCCAAGACTGGCCGCGCAAGCTCGACAAG
TTCACAGGAGATGGGGCGGTGGAACTTCTCACGGGCATTCGCCAATCGGG
CAATCACTTCTATCAGCTTGGACGCTATCACGAAGCACGGGCAAAATATC
GCAAGGCGAATCGATACTATCATTACCTGAGCAGACAGTTCGGTTGGCAG
CAGCTGAATCCTCTCAAAAAAACACCTTGTAGATGAGGATCTGCTCAAGG
TCGACGGCTTCTCCGTGGTAAACAACATTAATGCAGCCGCTGTGACCTAA
AAGTTGGCAACTATACGAGCGCTAGAGAAGTTTGCAACGAAGCCATTCGT
CTAGATCCGAAATGTAGCAAGCTTTCTATCGACGCGCCCAGGCGCAGCGC
GATTGCGCAACTACGAAGAAGCCATAAACGATCTGAAACGCTCCATCTCT
GCGGAAAAAACAGATCTAAATGAACTGACGGCACCAGCAGCTCTGCAGTA
CAACGACAACACGA
UFO02202.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8336-RD | 1395 | CG8336-RD | 145..1265 | 9..1111 | 5085 | 98 | Plus |
| CG8336-RC | 1445 | CG8336-RC | 195..1315 | 9..1111 | 5085 | 98 | Plus |
| CG8336-RA | 1500 | CG8336-RA | 250..1370 | 9..1111 | 5085 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9631193..9631576 | 657..1038 | 1695 | 98.4 | Plus |
| 3L | 28110227 | 3L | 9630818..9631139 | 336..657 | 1610 | 100 | Plus |
| 3L | 28110227 | 3L | 9630379..9630624 | 90..335 | 1230 | 100 | Plus |
| 3L | 28110227 | 3L | 9630221..9630302 | 9..90 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:21:38 has no hits.
UFO02202.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:20 Download gff for
UFO02202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8336-RC | 188..1290 | 1..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:42 Download gff for
UFO02202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8336-RA | 245..1347 | 1..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:32 Download gff for
UFO02202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8336-RA | 245..1347 | 1..1093 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:32 Download gff for
UFO02202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9630216..9630302 | 1..90 | 95 | -> | Plus |
| 3L | 9630380..9630624 | 91..335 | 100 | -> | Plus |
| 3L | 9630818..9631138 | 336..656 | 100 | -> | Plus |
| 3L | 9631193..9631642 | 657..1093 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:42 Download gff for
UFO02202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9623316..9623402 | 1..90 | 95 | -> | Plus |
| arm_3L | 9623480..9623724 | 91..335 | 100 | -> | Plus |
| arm_3L | 9623918..9624238 | 336..656 | 100 | -> | Plus |
| arm_3L | 9624293..9624742 | 657..1093 | 96 | | Plus |
