UFO02204.5prime Sequence
1110 bp (1009 high quality bases) assembled on 2008-12-21
> UFO02204.5prime
CAGTCGACATGATTGCGCAAAGTGTAATCAGCAAACTGCGACCGTGTGCC
CGCCGCTTGGCCAGCACGAGCTCCAAAGCCGCAGCTCCCAAATTCAACTG
GCAGGATCCGCTGAATTTGGAGAGCCAATTGACCGAGGAAGAGGTGGCCA
TTCGGGATGCGTTCCGTGGATACTGTCAGGCCGAGCTGCAGCCGCGCGTC
AAGATGGCCAATCGCCTGGAGACGTTCGACAAGAAAATTATGGAGGAGAT
CGGCAGTCTGGGTGTCCTCGGCTGCACCATTAAGGGATACGGCTGCGCCG
GAGTCTCTAGCGTTGCCTACGGCTTGCTCACCCGCGAGGTGGAGCGCGTG
GACTCCGCTTATCGGTCTGCTGTCAGTGTCCAGAGCTCGCTGGCCATGGG
CGCCATCTACGACTTTGGATCCGAGGAGCAGAAGCAACGCTATTTGCCCA
GCATGGCGGAGGGCAAGCTGATTGGTGCCTTTGGCCTAACTGAACCCAAC
CACGGTAGTGACCCCGCTGGCATGGAGACCCGTGCCAAGTACGATAGCAA
AAGCAAGACATACATCCTGAACGGATCTAAGACGTGGATTACTAGTGCGC
CCATCGCAGACGTCATAGTCGTATGGGCAAAATGCGAGGATGGCAAGGTA
CGCGGCTTCCTGGTGGATCGCAAGATATCCGGCAAGGGTTTGGAGACGCC
AAAGATCGAGGGCAAGTTCTCTCTGCGTGCTTCGCCCACGGGTATGATCC
TGATGGACGAGGTCCGTGTGCCAGAGGAGCAGTTGCTACCCAATGTGGCC
GGCTTTAGTGGACCCTTCAGCTGTCTGACAACGCTCGCTATGGAATCGCG
TGGGGAGCCCTGGGAGCAGCTGAACCTGCGTGGAGATTGCTCGCCAGTAT
ACACTGGATCGCAACATTCGGTCGTCCTTTGGCTGCAAATCAGTTGATCC
AAAAGAGCTGGCCGATGCATCACAGAGATTGCGGTGGGTCTGCAGCTTGC
CTGCATGTGGGTCGCCCTCAGATCGAAGCTGCACACGCCCGACTGATTTC
CTTTCGTATGCAACATACTGCCATCCTTGATTACGCGCAATGAGACTGCT
GGGGCAACGA
UFO02204.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9547-RA | 1441 | CG9547-RA | 95..1151 | 9..1055 | 4970 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6493306..6493855 | 1016..474 | 2405 | 98.4 | Minus |
| 2L | 23513712 | 2L | 6493970..6494438 | 477..9 | 2345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:30 has no hits.
UFO02204.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:17 Download gff for
UFO02204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-RA | 90..1148 | 9..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:36 Download gff for
UFO02204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-RA | 95..1153 | 9..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:38 Download gff for
UFO02204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9547-RA | 95..1153 | 9..1058 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:38 Download gff for
UFO02204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6493268..6493854 | 475..1051 | 97 | <- | Minus |
| 2L | 6493973..6494438 | 9..474 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:36 Download gff for
UFO02204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6493268..6493854 | 475..1051 | 97 | <- | Minus |
| arm_2L | 6493973..6494438 | 9..474 | 100 | | Minus |
