UFO02205.5prime Sequence
1134 bp (1033 high quality bases) assembled on 2008-12-21
> UFO02205.5prime
CAGTCGACATGGACTACATCTTCGAGTGCTTCTTCGACGACACCTTCGAG
CAGATCTCCCGCAACGGACTGCAGGACCGCCAGTCGCGGCGAGATGTCCT
CGACCACCTGAGCTCCATCATCAAGGGCTGCAGCGGCGGCCAGAACTCGC
AGACGGATGAGGTGGCCGCCATCGCGGTGACGGCGGCCATGAGGTACCAC
CGAATGGCCAAGGAGCAGAACGGCCAGGTCTGCCTCATGGGCAAGTATCA
CAACATCCTGTACATCGGACTGCGCACCTGCTGGGATTGGGGAGTCCGGG
ACTCGGAGGTGGTCGTCAAGCTGCTGGTGGCCATTTACGAGTGCGAGAAG
ACATATGAGCGCATTTTCCTGGGCGCCCTGTTTGGACCACATGCTCCGCA
CTTCATCGCCGGCTGGCGCAGTGACTTTCAGGATCAGCACGAGAATGTCC
GGGCTATGGTTTACTTTCTGAAGCACGCCACACGCGAACAGCTCACATTG
CCCGTCTGGATTCCGCGCTTCGAGCAGGAGCGACAGCTCAGATTCATTGA
TGTCCCCATTGAGTCATGCGGCAAGTCCTCGCCCCTTCGCATTGCCCTAC
AGGCGAACGCTCCCGAACTGCTGCTCATACTGCTGAGATACGGCGCCGCA
CCGCAGCCGCCAGACGGAGGCGCCTCCGTAATTATAGCGCTGCTCGACAA
ACTCATCGAGGATGGCCGCAATTACAGCTTCGAACTGGTCATGTGCCTCA
AGATTCTGCTGCGCAATGTGGTCATGATTGAGATGCCCTTCAAGCCCCTT
TTATACGCTGCCCGAAGGGAAATGTTCTTCGATCGCTATGGCCGCCTTTT
AATGGACAAGATTATCGGCAAAGAGCAGTCTACGGAGTGCCCAGTCTACG
TCATTTATGCCGCTGCTGTATCCGCGACGTCATGCGATGCACAATCAACT
GCCAGCGGCATCGACACGTTGAGGTTGCCAAAGCGCTGCAACGCTACATC
GATCTCACGAGGAGCTTGAAAGACTGAGCACAGACACGGAGACAGAATCA
CAAGGGAAAGTCTCGCCAATGCAAAAATGGAAGCGAATGACGCTGGATAC
AATTCAGATGCAGGAGCTAGACAGAGTGAATCAG
UFO02205.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stops-RC | 2154 | CG31006-RC | 543..1658 | 8..1103 | 5015 | 97.8 | Plus |
| stops-RA | 1970 | CG31006-RA | 359..1474 | 8..1103 | 5015 | 97.8 | Plus |
| stops-RB | 2109 | CG31006-RB | 498..1613 | 8..1103 | 5015 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31168025..31168246 | 229..8 | 1110 | 100 | Minus |
| 3R | 32079331 | 3R | 31161173..31161331 | 794..636 | 795 | 100 | Minus |
| 3R | 32079331 | 3R | 31160958..31161078 | 912..793 | 555 | 99.2 | Minus |
| 3R | 32079331 | 3R | 31166350..31166460 | 437..327 | 555 | 100 | Minus |
| 3R | 32079331 | 3R | 31166176..31166282 | 541..435 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 31167326..31167429 | 327..224 | 520 | 100 | Minus |
| 3R | 32079331 | 3R | 31163540..31163638 | 637..539 | 495 | 100 | Minus |
| 3R | 32079331 | 3R | 31158746..31158862 | 1024..912 | 370 | 95.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:22 has no hits.
UFO02205.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:16 Download gff for
UFO02205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stops-RA | 351..1404 | 1..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:41 Download gff for
UFO02205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stops-RB | 487..1540 | 1..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:19 Download gff for
UFO02205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stops-RB | 490..1543 | 1..1044 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:19 Download gff for
UFO02205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31158763..31158861 | 913..1008 | 96 | <- | Minus |
| 3R | 31160958..31161076 | 795..912 | 99 | <- | Minus |
| 3R | 31161173..31161329 | 638..794 | 100 | <- | Minus |
| 3R | 31163540..31163635 | 542..637 | 100 | <- | Minus |
| 3R | 31166176..31166279 | 438..541 | 100 | <- | Minus |
| 3R | 31166350..31166459 | 328..437 | 100 | <- | Minus |
| 3R | 31167326..31167425 | 228..327 | 100 | <- | Minus |
| 3R | 31168027..31168251 | 1..227 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:41 Download gff for
UFO02205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26984485..26984583 | 913..1008 | 96 | <- | Minus |
| arm_3R | 26986680..26986798 | 795..912 | 99 | <- | Minus |
| arm_3R | 26986895..26987051 | 638..794 | 100 | <- | Minus |
| arm_3R | 26989262..26989357 | 542..637 | 100 | <- | Minus |
| arm_3R | 26991898..26992001 | 438..541 | 100 | <- | Minus |
| arm_3R | 26992072..26992181 | 328..437 | 100 | <- | Minus |
| arm_3R | 26993048..26993147 | 228..327 | 100 | <- | Minus |
| arm_3R | 26993749..26993973 | 1..227 | 98 | | Minus |
