UFO02206.5prime Sequence
1108 bp (1019 high quality bases) assembled on 2008-12-21
> UFO02206.5prime
CAGTCGACATGATGATGCGACCGGAGCTGACGCTGGCCGGCCTCCTGCTG
CTCTGCGCCACTGGCGCCAGCGCCTGGCACTCGGAGGAACTGGAGATCTT
TGACTTGGTCGAGGAGGTAAACCGCAACTTCTACGAGTTCATGGGCATCA
ACCAAACGGCAACGGGCGCCGAGGTGAAGCGCGCCTTCCGCACCCTGTCC
ATTGTCCTGCATCCGGACAAGAATCCGGCCGAGGATGCCAACATCCAGTT
CCGCAACCTCGTTTCCATCTACGAGGTTCTCAAAGATCCGTCGCGCCGAG
AGAAGTACGACCGGGTACTGAAGGAGGGCATGCCCAACTGGAAGTCTGCC
CTCTACTATTACCGACGTATGCGCAAGATCGGGCTCTATGAGGGCGCCTT
TATCCTCTTCCTGATAACCACCGTGGGCCAGTATCTATTCGCCTGGGCGG
CCTACCTCGAGAAGAAGTACACCGCCGAACAGGTCTTTGGCACCAAGCTG
AAGAAGCTGCAGAAGAAGAACAAGAACATCGACATGGACGTGATCCTTAG
CGAGATACCGATGCCCTCGCTACTCAACACCCTGCCCATCCAGATCCCCT
TGGCCCTGTGGAACCTGCCGCGCACCATCAAGAACGGATTCAGCAAGGCC
AACGAGCTAAAGGAACTCGCCCTGGAGAAGCGCAGGCAGGAACTGGAGGC
CGTCCGTCGTCAGGAGGAACTGGAACGGGAGGCCGAGGAGCAGGCGCGCC
TTCGCAAGGAGCACAAAGGAGAATCTGCGGAAGCGCAAGCAGAACAGCAA
GGCTCCAGAGAAGACCGAGGAAGAATTGCGCGGCTATTCGCAGATTCAGA
CTCGCGAATTGACAGATGACGATGCAGTTCGTCCAGCTTCCCAGAGAGCA
CGGTGAGCGGCGGCTTCTGGACTGACGAGATCTTACCGAGCTGATTCGCT
TGTAAAAAGTATCCTGGCGGAGCTGGCAGCCGCTGAACACTATCGCGAGT
CGATGAACCGCAGCGTTCAGAGGTGACTTTATGGCGGCAAGAATGAGGAG
AATGGCTACGCATCCCGCAACCTGAAAGCGTGCCGAGGCTCTCGTCAGAG
TCCCAGCA
UFO02206.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7556-RB | 2893 | CG7556-RB | 152..1266 | 9..1108 | 5090 | 98.1 | Plus |
| CG7556-RA | 2005 | CG7556-RA | 152..1266 | 9..1108 | 5090 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19178992..19179679 | 696..9 | 3410 | 99.7 | Minus |
| X | 23542271 | X | 19178042..19178247 | 895..689 | 985 | 99.5 | Minus |
| X | 23542271 | X | 19177792..19177964 | 1059..895 | 440 | 93.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:55:59 has no hits.
UFO02206.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:14 Download gff for
UFO02206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-RA | 268..1390 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:04 Download gff for
UFO02206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-RA | 143..1265 | 1..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:17 Download gff for
UFO02206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7556-RA | 143..1265 | 1..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:17 Download gff for
UFO02206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19177737..19177962 | 897..1107 | 91 | <- | Minus |
| X | 19178040..19178247 | 689..896 | 99 | <- | Minus |
| X | 19179000..19179683 | 1..688 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:04 Download gff for
UFO02206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19071770..19071995 | 897..1107 | 91 | <- | Minus |
| arm_X | 19072073..19072280 | 689..896 | 99 | <- | Minus |
| arm_X | 19073033..19073716 | 1..688 | 99 | | Minus |
