UFO02207.5prime Sequence
1129 bp (992 high quality bases) assembled on 2008-12-21
> UFO02207.5prime
CAGTCGACATGAGTTTCCTAAATTACGTGTTTGGCCCCAACCTCTACATG
GAATACCGCGGTGTGCCGGAGCCGCAGCGCAAGATGTACGAGGCAGGTGC
CGTGGAAAAGTTCGGGGAGCAGATTCTATCGACGCTATCGGTTATGTGGT
CCGTGGGCTATTATACTTCTCCGCTGCTCGTCACATTCCTATACCGACGC
GGCTACCTGGTGACCGATTCCATACCGACGCTGGCCAAGATCACCACCAG
CGTGGGCCTCATCGTCATCCTATCGCTGGTGATGCGCGGCCTGGGGCGCA
AGCAATCGCGCTCCTACTCCAACATGATTAAGGCCCTCGTCCGAGCAAAG
TCCTCCAAGGCACCAGGAGATGCCAACAGCGAGCTGCGTCGCTTCGACAT
CGAGTTCAACGCTTGGCCGGTGGACTTTGATGTGAAAGCTCTAACCGGTG
ATACCAAAAAGCCGGTGGTTACGGCTAGAAGGCGGGAGCCCATCCAGCTG
GCGACACTGCCCTGTGAGGCCATCGCCTACCTGGCCATAAACACCTTTGG
GCTCTCCATGATCTATCCGGGTTCGGTCAAACTACTCCAGAAACTTATGA
GACCCATGCTGATCTCCGGACGCGCCAAGCTCATCGAGGATGACAACGGC
ATCCGCTACAAGGTTAAGACCATTGACTCGAACGAAATCGATACGTTGTT
CATTGACAATCGCCCAAACAACGTGGGAAATGGCAAGACTCTAGTCATTT
GCTCCGAGGGCAATGCCGGTTTTTATGAAGTGGGCATTATGGCCACCCCA
GTGGCCTTAAAGTATTCCGTTTTGGGCTGGAATCATCCCGGGATTTGCCG
GCAGCACAGGCACTCCTCATCCCCACCAGGACAAGAACGCCATCGATGCC
GTGTGCAGTTTGCCATCAACAATCTTGGTTCCCGTAGGAGGATAAAATTT
TGTATGGCTGAGCATTGTGCTTTAGTAAACTATACGCTGCCTCTGTGTAT
CGATGTCAAGGGAGTGTACTAAACGCAACTTCGACGATGTGCTTCTATTG
CCGTTCCTCGCATGCAAGCTGCACTGCGGGCATTGTTCAAGGTAGCCATC
GACTACTGTATTGAACAAATGCGGACCTG
UFO02207.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1309-RA | 1859 | CG1309-RA | 114..1237 | 9..1118 | 5045 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4260368..4260875 | 601..1099 | 1760 | 94.7 | Plus |
| 3L | 28110227 | 3L | 4259743..4260057 | 134..448 | 1575 | 100 | Plus |
| 3L | 28110227 | 3L | 4260108..4260261 | 448..601 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 4259543..4259668 | 9..134 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:01:57 has no hits.
UFO02207.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:13 Download gff for
UFO02207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1309-RA | 125..1248 | 9..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:49 Download gff for
UFO02207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1309-RA | 114..1237 | 9..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:30 Download gff for
UFO02207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1309-RA | 114..1237 | 9..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:30 Download gff for
UFO02207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4259543..4259668 | 9..134 | 100 | -> | Plus |
| 3L | 4259744..4260057 | 135..448 | 100 | -> | Plus |
| 3L | 4260109..4260260 | 449..600 | 100 | -> | Plus |
| 3L | 4260368..4260899 | 601..1118 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:49 Download gff for
UFO02207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4259543..4259668 | 9..134 | 100 | -> | Plus |
| arm_3L | 4259744..4260057 | 135..448 | 100 | -> | Plus |
| arm_3L | 4260109..4260260 | 449..600 | 100 | -> | Plus |
| arm_3L | 4260368..4260899 | 601..1118 | 94 | | Plus |
