UFO02208.5prime Sequence
971 bp (-106 high quality bases) assembled on 2008-12-21
> UFO02208.5prime
CAGTCGACTTGAGTGCAGCCACCGCCGCCGCCGCCGCTTCTGGGATCCAA
AGCACAGCGGGCGCCATTCCCATGCGCAATGAGAAAGGTGAATTGTCCAT
GCAAAAGGTGAAGGTGCAGCGATACATATCCGGTAAGCGACCCGACTACG
CCCGTGCGGACTCCAGTTCGGAGGAGAGCGACGACGATGACTTCATTGAC
ACCAGGAAGCGCCTTGAGCGCCACAAGGCGGAACGGCATAAGCTGGAGCT
CTCCCGTCAAGGCGGCAGCGCGGAGGGCGAAGAGCGGGCGGCGGGTGAGG
GCCAGGAGGAGGACGATGCCGAGGTGGACGATCCACGCCTCCGAAGATTG
CGGCAGCGACCCGTAGACTTGGAGGACATGGAACGTGAGCGGAGGGAACG
CCGCCGACACATCCACGAACCGGAAATCATGGAGAGTGACAGCGAAGACG
AGGAGGAAGACGAGGGAGCACAGGGAGCGATTCGGCGGGGCACCAATAAG
ATCACACTGGCATCCGAATCCGACACGGATGCGGAGCTCAGCGACACGGA
GCTGGAGAACCGGCGCACCAAGCTGAGATCCCGCATGCTGCAGCAGCAGC
GCGAGGAGGAGGTTCTACAGAAAGAGGATGAGAAACAGTCGGAATCGTCC
GAATCAGAAAGCTCCGAGTACTATGAGGAGACCGAAAGCGAGGAGGACAA
CGAACCCCGCCTGAAGCCGCTCTTCGTCCGAAAGAGAGATCGTGCCACCA
TCCACGAGAAAGAGCGAGAGGCTCAGAAGCAGATGCAGCTGGAGGCGGAG
GCCTAGCGGGCAGCCAAGGAGCGCACATGAGCCACCCTGCTAATGGTCGA
GGAGATCGTCATGAAAGATCTGGTAGATGACCAATTCTGAGACTATGATG
CCTGCATCGAGACGTGTGCTCGGACGACAAAACTACTATGTGCATACTAG
CTGGGCTGCCTGAACTCAGCG
UFO02208.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:36:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mfap1-RA | 1682 | CG1017-RA | 110..1075 | 10..968 | 4195 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1941314..1942161 | 86..932 | 3750 | 96.9 | Plus |
| 3L | 28110227 | 3L | 1941177..1941256 | 10..89 | 385 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-28 23:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 634..700 | 832..763 | 117 | 67.1 | Minus |
UFO02208.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:11 Download gff for
UFO02208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1017-RA | 111..1050 | 1..942 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:25 Download gff for
UFO02208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mfap1-RA | 105..1044 | 1..942 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:47 Download gff for
UFO02208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mfap1-RA | 105..1044 | 1..942 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:47 Download gff for
UFO02208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1941172..1941254 | 1..87 | 94 | -> | Plus |
| 3L | 1941316..1942172 | 88..942 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:25 Download gff for
UFO02208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1941172..1941254 | 1..87 | 94 | -> | Plus |
| arm_3L | 1941316..1942172 | 88..942 | 96 | | Plus |
