UFO02209.5prime Sequence
1104 bp (996 high quality bases) assembled on 2008-12-21
> UFO02209.5prime
CAGTCGACATGACTCGATCGCAGATGATCTCCAGCCTGCGCCGTTCTACA
CTGGGATTATTCAGGTGCCACAAGGCGCTCATTTTTGCCAGAATTCCAGC
TTTTCAGCAGGTGAGATGCAAGAGTGAGGATGGCAGCTGCAACACCTGCA
ACTTGCAGGGAGTAGTGGTTGGCCTGTATGCCAAGGATGGTGATAAGGGG
CTCAAGTTGTCCCCAGGTGGCGAAAAGTTCGACGACCGTGTTGGCGGCAA
GATCACGGAACTAATCAAGGAATCTGGACTCAATGGGGAGCTCGGAGTGG
GTCGACTATATCAGAATATCGATAAGGAGTACTGGGCCGTGGCGGTTGTG
GGCCTGGGCAAGGAAGGAGCTGGCTTCAATGCCGAGGAAGTCATCGACGA
GGGCATGGAGAACGTGAGGGTGTGCGCCGCGGTGGGTGCCCGAGCACTTC
AGCTGCAGGGCTGCACCACCTGCCATGTGGATGGCATGGAGTATCCGGAG
CAGGCTGCCGAAGGCGCCGCCATGGCCGTGTGGCGTTACAATGTGAACAA
GCGCAAGAAGAACCGCATTGCCATACCGAAACTGGAGCTGTACGGATCCA
CAGATCAGGATGCCTGGACAAGGGGGCTGTTCAAGGCCGAATCACAGAAT
TTGGCCCGTCGTTTGTCGGACACGCCCGCCAACCAGATGACGCCATCCAT
TTTCGCCCAAGCCACCGTGGATGCCTTGTGTCCCTGTGGTGTTTCAGTCG
AAGTGCGTTCAATGGATTGGATTGAGACTCAGAATCTCAACTCCTTCCTC
ATGGTGGCCAAGGGCTCGTGCGAGCCACCCATTATCCTAGAGGTTAGCTA
TTGCGGCACCTCACCGGAGGAGCGACCCATTCTTATGCTCGGCAAGGGAC
TGACATTCACAGCGGTGCTATGCCTGCATCCGAAAAGGGGAATGACGAGT
ATCGCGAGCAGTTCCGGAGCTGCAGTCTGCTGCGCATCGAGCGCAGCGCA
CTATCGTTGCCTATAATGTGTCCGCCGTATACCCTGGTTGAAATTGCATC
GGAATGCACCAGCCGGCGAGTGTGGTCACCTACTAACGGCAAGACATGCC
CACT
UFO02209.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap8-RA | 2055 | CG4439-RA | 218..1329 | 9..1095 | 4890 | 97.4 | Plus |
| loopin-1-RC | 2078 | CG4750-RC | 591..1071 | 438..917 | 760 | 77.6 | Plus |
| loopin-1-RA | 2022 | CG4750-RA | 657..1137 | 438..917 | 760 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16491495..16492373 | 108..980 | 4130 | 99.3 | Plus |
| 2R | 25286936 | 2R | 16535635..16536069 | 474..908 | 735 | 77.9 | Plus |
| 2R | 25286936 | 2R | 13597183..13597747 | 334..898 | 635 | 74.2 | Plus |
| 2R | 25286936 | 2R | 16491317..16491420 | 9..112 | 520 | 100 | Plus |
| 3L | 28110227 | 3L | 10466968..10467362 | 474..868 | 250 | 70.9 | Plus |
| 3L | 28110227 | 3L | 10491599..10492021 | 476..898 | 210 | 70 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:47:24 has no hits.
UFO02209.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:10 Download gff for
UFO02209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4439-RA | 170..1226 | 1..1043 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:26 Download gff for
UFO02209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap8-RA | 212..1268 | 1..1043 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:03 Download gff for
UFO02209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap8-RA | 212..1268 | 1..1043 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:03 Download gff for
UFO02209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16491311..16491418 | 1..110 | 96 | -> | Plus |
| 2R | 16491498..16492446 | 111..1043 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:26 Download gff for
UFO02209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12378816..12378923 | 1..110 | 96 | -> | Plus |
| arm_2R | 12379003..12379951 | 111..1043 | 98 | | Plus |
