UFO02212.5prime Sequence
1093 bp (1007 high quality bases) assembled on 2008-12-21
> UFO02212.5prime
CAGTCGACATGGCACTCATCGAAATTTGTCTGGCCCTTGTGGTCATCGGT
TATCTCATCTACAAATGGAGCACGGCCACCTTCAAAACCTTTGAGGAAAG
GAAGCTCTACTTCGAAAAGCCATATCCCTTTGTGGGTAATATGGCTGCAG
CGGCCTTGCAGAAGTCGTCCTTCCAGAGACAACTCACCGAGTTCTACGAA
CGCACTCGTCAACACAAACTGGTGGGCTTCTTCAATATGCGCACACCTAT
GATCACGCTAAACGACCCGGAGCTGATCAAAAAGGTCTGCGTAAAGGACT
TTGACCACTTCCCCAACCACCAGCCCTTCATCACCTCCAACGATCGCCTG
TTCAACGACATGCTCAGCGTGATGAGGGACCAGCGGTGGAAGCACATGAG
AAACACCCTCACTCCGGTCTTCACGGCGGCCAAAATGCGCAACATGTTCA
CCCTGATGAACGAGAGCTTCGCGGAGTGCCTGCAGCACCTGGACAGCTCT
TCGAAAACGCTTCCCGGCAGAAAGGGCTTTGAGGTGGACATGAAGGTGAT
GTGCAACAAGCTCTCCAACGACATCATCGCCACTACCGCATTCGGGCTAA
AGGTTAACTCGTACGACAACCCGAAAAATGAGTTCTACGAGATCGGGCAG
TCGCTGGTTTTCTCCCGAGGACTTCAGTTCTTCAAGTTCATGCTGTCCAC
CTTGGTGCCAAAGCTTTTCAGTCTTTTGAAGCTTACTATTTTCGACTCCG
CCAAGGTTGATTACTTTGCTCGCTTGGTGGTGGAAGCCATGCAGTACCGC
GAGAAGCACAATATCACCAGGCCCGACATGATCCAGCTCCTGATGGAGGC
CAAGAATGAGTCGGAGGATAAATGGACGGACGATGAGATCGTGGCCCAGT
GCTTCATTTTCTTCTTCGCGCCTTCGAAAACAACTCCAATCTGATCTGCA
CCACACTTACGACTGCTTTACATCCCGACGTCAGGAGCGTTTATACGAGG
AGATAGTCGAGACAGAAGCTCTGACGGTGCACACCTCACTTACGGACGCG
TGCAGAAGATGAACCTACCATGGACATGGTCATTCTCTCGAGT
UFO02212.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp9b2-RA | 1667 | CG4486-RA | 51..1132 | 9..1083 | 5065 | 98.5 | Plus |
| Cyp9b1-RA | 1752 | CG4485-RA | 131..1113 | 108..1083 | 1790 | 80.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7131312..7131819 | 722..215 | 2540 | 100 | Minus |
| 2R | 25286936 | 2R | 7130872..7131239 | 1083..723 | 1235 | 94.6 | Minus |
| 2R | 25286936 | 2R | 7131884..7132089 | 214..9 | 1030 | 100 | Minus |
| 2R | 25286936 | 2R | 7128708..7128939 | 954..724 | 795 | 90.5 | Minus |
| 2R | 25286936 | 2R | 7129029..7129510 | 696..215 | 745 | 77 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:46 has no hits.
UFO02212.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:21 Download gff for
UFO02212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9b2-RA | 42..1136 | 1..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:46 Download gff for
UFO02212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9b2-RA | 46..1140 | 1..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:35 Download gff for
UFO02212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9b2-RA | 46..1140 | 1..1093 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:35 Download gff for
UFO02212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7131884..7132094 | 1..214 | 98 | | Minus |
| 2R | 7130864..7131239 | 723..1093 | 95 | <- | Minus |
| 2R | 7131312..7131819 | 215..722 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:46 Download gff for
UFO02212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3018369..3018744 | 723..1093 | 95 | <- | Minus |
| arm_2R | 3018817..3019324 | 215..722 | 100 | <- | Minus |
| arm_2R | 3019389..3019599 | 1..214 | 98 | | Minus |
