UFO02214.5prime Sequence
1140 bp (1036 high quality bases) assembled on 2008-12-21
> UFO02214.5prime
CAGTCGACATGCTCCGAACCCGACTCATCCAGGCGGCCAGCTCCGCCCAG
CGAGCGTTCTCCACCAGCCAGAAGGCCCTGGCGGCCAAGCAGATGACCGT
GCGAGATGCCCTCAACAGCGCATTGGACGATGAGCTGGCCCGCGACGACC
GCGTCTTCATCCTGGGCGAGGAGGTGGCCCAGTACGACGGTGCTTACAAG
GTTTCCCGTGGACTGTGGAAGAAGTACGGCGACAAGCGCGTCATCGACAC
GCCAATCACAGAGATGGGCTTTGCCGGCATCGCTGTTGGCGCTGCCATGG
CCGGTCTGCGTCCCGTGTGCGAGTTCATGACCTGGAACTTCTCCATGCAG
GCCATCGATCACATCATCAACTCGGCGGCCAAGACCTTCTACATGTCTGC
CGGTGCCGTCAATGTGCCCATTGTGTTCCGTGGTCCCAATGGAGCCGCTT
CCGGTGTTGCCGCCCAGCACTCTCAGTGCTTCGCCGCCTGGTACGCCCAC
TGCCCCGGCCTGAAGGTCCTTTCGCCATACGATGCCGAGGATGCCCGCGG
ACTGTTGAAGTCCGCAATCCGTGATCCCGATCCAGTGGTCTTCCTGGAGA
ATGAGCTGGTCTATGGCACGGCATTCCCTGTGGCCGATAACGTGGCCGAC
AAGGACTTCTTGGTGCCCATCGGCAAGGCCAAGGTAATGCGGCCGGGCAA
GGACATTACCCTGGTGGCGCATTCCAAGGCGGTGGAGACATCGCTTCTGG
CAGCTGCCGAGCTGGCCAAGAAGGGTATTGAGGCTGAGGTCATTAACCTG
CGCTCCATTCGTCCTCTGGACACGGCGACCATCTTCGCCTCTGTACGAAA
GACCCACCATCTGGTGACCGTGGAGACGGCTGGGCCCAACACGGCGTTGG
AGCTGAGATCTGCGCCCGCATATGGAGGACCAGACCTTCTTCGAGCTGGA
CGCCCCCGTATGGCGCTGCGCCGGCGTGGATGTGCCCATGCCCTATGCCA
GACGCTGGAGCCCACGCCCTGCCCGCGTTCAGATTCTCGTGGAGGCGACT
CTAGTTCTGGGTGGCAAGTGGCAGCCGCTGCGCACAGCTAGCTTTCTAAA
CATGTTGGCGCGGGCCAGGTATGCTATCTATCTATCTATC
UFO02214.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11876-RD | 1386 | CG11876-RD | 51..1136 | 9..1082 | 5090 | 98.5 | Plus |
| CG11876-RA | 1455 | CG11876-RA | 120..1205 | 9..1082 | 5090 | 98.5 | Plus |
| CG11876-RB | 1025 | CG11876-RB | 154..507 | 9..362 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29115094..29115508 | 363..777 | 2075 | 100 | Plus |
| 3R | 32079331 | 3R | 29113258..29113451 | 9..202 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 29113992..29114155 | 199..362 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 29115747..29115910 | 893..1052 | 590 | 96.3 | Plus |
| 3R | 32079331 | 3R | 29115566..29115687 | 774..894 | 545 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:11:35 has no hits.
UFO02214.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:05 Download gff for
UFO02214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11876-RD | 144..1220 | 1..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:19:45 Download gff for
UFO02214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11876-RA | 110..1186 | 1..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:57 Download gff for
UFO02214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11876-RA | 110..1186 | 1..1067 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:57 Download gff for
UFO02214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29113248..29113449 | 1..200 | 98 | -> | Plus |
| 3R | 29113994..29114155 | 201..362 | 100 | -> | Plus |
| 3R | 29115094..29115505 | 363..774 | 100 | -> | Plus |
| 3R | 29115567..29115686 | 775..893 | 98 | -> | Plus |
| 3R | 29115748..29115928 | 894..1067 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:19:45 Download gff for
UFO02214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24938970..24939171 | 1..200 | 98 | -> | Plus |
| arm_3R | 24939716..24939877 | 201..362 | 100 | -> | Plus |
| arm_3R | 24940816..24941227 | 363..774 | 100 | -> | Plus |
| arm_3R | 24941289..24941408 | 775..893 | 98 | -> | Plus |
| arm_3R | 24941470..24941650 | 894..1067 | 94 | == | Plus |
