UFO02215.5prime Sequence
1133 bp (1039 high quality bases) assembled on 2008-12-21
> UFO02215.5prime
CAGTCGACATGGACAACAGCGCGTTGATGCCACAGGCGAGCGGACGTCAT
ATGCCGCCCGAGGAACTGGCCATGCAAGCACTAACCAAGCAGCTTTACAA
GTCTCGTCTCTTCCGCGGTTATTATATGGAACGCTGCTTGGTGGAGCAGG
TGTCCGGCTACCGGGACGTGGTGGTGCTTCAACGCAGTGAGCGAGAGTTG
GAGAAGCTGCTGCACTCGAGTGCCGGCCAATTACAAAAGTTTTATCAACG
CTTCGTGCCCAATATGTGGGTGGGCATCACCTATGGGAGTTACGGAAGTT
ACCAGCACAAAGCAGATCCTGGTCAACTGGAAACCTGCATCTGGACAGAG
ATGAATGATCTGGCTTTTGGAGAGTATTGGTTTAGCATCAAGACCCTTCG
CTTCCGGGACCATGAAGTCCAGTTCAAACTGAAGATGATAAGGCCCGTGG
AGCCAGAGCTGATGGCGACGCCGAGGAGATCACTGATTCTTAATAGAAGT
AGCCCTGTTAAGGCGATCACAGCGGGTGGGGAAAACTCCTCCTCCAAGCC
GGATGAAGTGGCGGAGCAAATTCAGCTGGGCCTTAATGATTTTTTGGCTG
TGCTGCAACAGTGGGGTGATGGAGTCAAACAAACCGTGTACGACTTCATG
ACCAACGATGTCAACAAGAGGAACATTTTGGGCACCATTCGGTTTCTGGG
TCTACTAATTTTCTCTGCCTTGGGTGGAGCCGCACTAGCGCTACGATTCC
TACGCGTATTTGCTGTGCGATTCCTGTTTGAGCTGAGTCGTTTCACACAT
ACAGCCACTCCAATAGTGTTTAAACTAATCGAGTTTCTGAACAAGATTGT
GGGTGCTATCTTCATACTTTTGACCATGATTTGGAAAGACATTGTCACTC
GTGGACATCCGGAACCGAAACAGCAGCAGCTGCATCTGGAGGCAAGTAGC
CGCTTCAGAGCATCATACGAGCGTCGACCAAATCGACGTAGTCCCCGGTG
GCAGCTTTCTAGACCATCGTTTGGCCGCGCGGGCCAGTTAGTTGTCATAA
TCATAATCATAATCTAATCTAATCCAACTAGCTTAGGGAATCTGGTATGA
CTTGCTGATTCCACAATAAACGGCGGACCGAGC
UFO02215.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4287-RB | 1644 | CG4287-RB | 267..1270 | 4..1001 | 4860 | 99.2 | Plus |
| CG4287-RA | 1648 | CG4287-RA | 275..1274 | 8..1001 | 4855 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15962541..15963540 | 1001..8 | 4760 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:55:38 has no hits.
UFO02215.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:04 Download gff for
UFO02215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RA | 250..1256 | 1..1001 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:55 Download gff for
UFO02215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RB | 246..1252 | 1..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:03 Download gff for
UFO02215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4287-RB | 264..1270 | 1..1001 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:03 Download gff for
UFO02215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15962541..15963548 | 1..1001 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:55 Download gff for
UFO02215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11788263..11789270 | 1..1001 | 99 | | Minus |
