UFO02216.5prime Sequence
1139 bp (1018 high quality bases) assembled on 2008-12-21
> UFO02216.5prime
CAGTCGACATGATGAGCAACCTTTGCAAATACGGACCGCCCCCAGATTCC
GACTCTGATAGCAGCTACGATGGATTCTACTTCTCGGATAAGGTGAAACG
CTCGAAACCAGCTCCTTACGTGGATCCCGAGCAAAAGCTCTACGATGCAG
TCGTCGCTGGGGATCTCAAGACGATGCAGGAGGAGATGCGCAAACTCGTC
CTCCAAGTGGATCAGCCAGTAAAAGGTGGTCTTAACTTACTGATGCTCGC
CTGTCGCGAGGGCCACTACAAAATAGTTGAATGGCTGCTGGAAAGGGCAG
GGGCCAACGTGAATCGGCAGCTGGATTCCTTGATGCCGCTGATGATGGCC
TGCAATACCACCCACAAGGATCCGTGCCTGGCGGAGAGAATTGTGGGCCT
GCTCTTGCGGCACGGAGCCGTGATCAATGTTTCGGAAAAATATGGAATGA
CACCCTTTATGTTCGCCTGCCAAAATGGCTTTGCCGGCGTTGTGCGTCTG
CTTATTAAGGATGCTAGTTTCGATGCTGTGGATAATCAGGGCTGCACTGC
CATCTTTCATGCCATCGAGAAAAATCACGTGGAAGTGGTCAAGCTGTTGG
TGGAGGCGGGCGCGAATGCCACGATAGCCAACAACAAAGGCTACACGCCC
ACCCAGGTGGCGGAGTGCCATGGATACTACGACCTGCTGGAGATCCTGCC
GCGACCAGCCTCCACTTACCTAGTGCCGACGCACTTCCTGGGCTACAACA
CGCTAAGGGATCACATTCCACGCATCTTCCTTAAGAGCGATTGCCCGGAA
TATTTTCAAGAACTTAACGGCATACTGGAGGCCATCAATATTGGCAACAT
GGTTCAATACTTTGCCATTGCGAGGATCTCGCTGGCAGATTTCCTCGTCA
TGGATGAGCAGTCACTTCGCGAGATCGGCATCGAGTATCCCATCTTCGTC
ACAAGATACTGACGGGCATTCTTGACTTTCATCTTCATCATGAGCAACTC
GTCGATAGCTCGGTCAAAAAGATGAAATGAACACTCTATGAAATTCTACT
GATCACGCAAGTCATCTGCAACTTGGGTATTATCAGCCTCCCTGCCTCCA
TCTAAAAACAGGACCAATTAATGGCACCTCGAAAGTGCA
UFO02216.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gasz-RA | 1908 | CG2183-RA | 96..1194 | 9..1095 | 5140 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8168188..8169073 | 91..975 | 4380 | 99.9 | Plus |
| 2R | 25286936 | 2R | 8168043..8168128 | 9..94 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:16:41 has no hits.
UFO02216.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:02 Download gff for
UFO02216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2183-RA | 97..1181 | 9..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:23 Download gff for
UFO02216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2183-RA | 96..1180 | 9..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:37 Download gff for
UFO02216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gasz-RA | 96..1180 | 9..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:37 Download gff for
UFO02216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8168043..8168126 | 9..92 | 100 | -> | Plus |
| 2R | 8168190..8169073 | 93..975 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:23 Download gff for
UFO02216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4055548..4055631 | 9..92 | 100 | -> | Plus |
| arm_2R | 4055695..4056578 | 93..975 | 99 | -> | Plus |
