UFO02217.5prime Sequence
1104 bp (999 high quality bases) assembled on 2008-12-21
> UFO02217.5prime
CAGTCGACATGTCATCCGGAGATTTTGGCAATCCGCTGCGGAAGTTCAAG
CTCGTCTTCCTCGGCGAGCAGAGTGTGGGCAAGACCTCGCTGATTACGCG
CTTCATGTACGACAGCTTCGACAACACGTACCAGGCGACGATCGGAATTG
ATTTCCTATCGAAGACCATGTACCTGGAGGATCGCACTGTGCGCCTGCAG
CTGTGGGATACGGCGGGACAGGAGCGATTCCGCTCGCTGATACCCTCGTA
CATACGCGACTCCACGGTGGCAGTGGTCGTTTACGATATCACCAACACCA
ACTCGTTCCACCAGACCTCCAAGTGGATCGATGACGTGCGCACGGAGCGG
GGTAGCGACGTCATCATCATGCTGGTGGGCAACAAGACGGATCTCTCCGA
CAAGCGTCAGGTGTCCACCGAGGAGGGTGAGCGCAAGGCGAAGGAGCTTA
ACGTGATGTTCATCGAGACAAGCGCCAAGGCCGGCTACAATGTGAAGCAA
TTGTTCCGACGGGTGGCCGCGGCACTGCCCGGCATGGATTCCACGGAGAA
CAAGCCCTCCGAGGACATGCAGGAGGTTGTGCTAAAGGACTCACCCAACG
AGACAAAGGATCCCGAGGGCGGCTGCGCCTGCGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGCGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAATTACGCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCGACATGAAGCCATCACAAACGCATGATGAT
CTGATCGCAGCGGCATCAGCACCTGTCGCTGCGTATAATATTTGCCCATG
TGAAACGGGGGCGAGAGTGTCAATGCCACGTTTATCAACTGGTGACTCAC
CAGGAATGCTGAAACGAAAACCTTTCCATTACGTTAGAATGGCAGTTACG
TACG
UFO02217.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab6-RB | 1896 | CG6601-RB | 318..941 | 9..632 | 3120 | 100 | Plus |
| Rab6-RA | 1830 | CG6601-RA | 318..941 | 9..632 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12108176..12108799 | 632..9 | 3120 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:55:12 has no hits.
UFO02217.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:23:01 Download gff for
UFO02217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab6-RA | 320..949 | 2..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:47 Download gff for
UFO02217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab6-RA | 312..941 | 2..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:45 Download gff for
UFO02217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab6-RA | 312..941 | 2..632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:45 Download gff for
UFO02217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12108176..12108805 | 2..632 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:47 Download gff for
UFO02217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12108176..12108805 | 2..632 | 99 | | Minus |
