UFO02220.5prime Sequence
1103 bp (1005 high quality bases) assembled on 2008-12-21
> UFO02220.5prime
CAGTCGACATGGCCGCAAACTACGGCATCTCGACGGCAGCTCTGCGTAGC
CAGCTGATGGGCCTGATCAACTTCACTGGCACGCACAAGGACCAGGCGGA
CAAGTACCGCCAGCTGCTGAAGACTGTGCTGACGAACACCGGCCAAGAGC
TGATCGATGGGCTCCGGCTCTTTGTGGAGGCCATTGTAAACGAGCACGTC
AGCCTGGTGATCTCGCGGCAGATCCTTAACGACGTGGGCAGCGAGCTGAG
CAAGTTGCCTGACGATCTGTCCAAGATGCTTTCTCACTTCACCCTGGAAA
AGGTCAATCCGCGCGTCATCTCGTTCGAAGAGCAAGTGGCTGGCATACGT
TTCCACCTGGCCAACATCTATGAGCGCAACCAGCAGTGGCGCGATGCGGC
CACAGTGCTAGTTGGCATTCCTCTGGAGACGGGTCAGAAACAGTACTCCG
TGGAGTGCAAGTTGGGCACCTACTTAAAGATCGCTCGACTCTATCTGGAG
GACAACGATTCGGTGCAGGCGGAGCTGTTCATCAACCGGGCATCATTGCT
GCAGGCCGAAACTAATTCCGAGGAGTTGCAGGTTCTATATAAAGTCTGTT
ATGCTCGTGTCCTGGATTACAGGCGCAAGTTTATCGAGGCCGCCCAGCGA
TATAACGAGCTCTCCTACCGCAAGATCGTGGACCAAGGCGAGAGGATGAC
GGCACTGAAGAAAGCGCTCATCTGCACAGTCCTCGCCTCTGCCGGACAGC
AGCGTTCCCGCATGCTGGCCACTCTGTTCAAGGATGAACGCTGTCAGCAC
TTGCCGGCCTATGGAATTTTGGAAAAGATGTACTTGGAGCGCATCATTCG
GCGCTCCGAGCTACAGGAGTTCGAGGCCCTGCTGCAGACCACCAAAAGCT
GCCACCTCCGATGGATCCTCGATCTTGGATCGGGCTGTTTCGAGCACAAT
CTGTGTCGCTAGTAGCTGTACAACACATAACTTTGGAGGAGCTAGGCGCT
CTGCTGACTACCCGCGTGAAGCAGAGAAGATGCCTCTCAAATGATTACGA
GTCGCATGACCGACATCGACAAATCCGCATTGTGCACTTCGAATCGACAC
GCC
UFO02220.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN4-RB | 1466 | CG8725-RB | 42..1147 | 9..1092 | 4960 | 97.6 | Plus |
| CSN4-RA | 1703 | CG8725-RA | 279..1384 | 9..1092 | 4960 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7972616..7973190 | 9..583 | 2875 | 100 | Plus |
| 2R | 25286936 | 2R | 7973246..7973679 | 580..1006 | 1805 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:43:39 has no hits.
UFO02220.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:22:58 Download gff for
UFO02220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-RA | 271..1283 | 1..1006 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:09 Download gff for
UFO02220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-RA | 271..1283 | 1..1006 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:02 Download gff for
UFO02220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN4-RA | 271..1283 | 1..1006 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:02 Download gff for
UFO02220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7972608..7973188 | 1..581 | 99 | -> | Plus |
| 2R | 7973248..7973679 | 582..1006 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:09 Download gff for
UFO02220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3860113..3860693 | 1..581 | 99 | -> | Plus |
| arm_2R | 3860753..3861184 | 582..1006 | 98 | == | Plus |
